Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02240 CAACTTTGTAACACTTTGTGTCTCCAACTCCCGATACTTTCTCACTTCACCCTCCCTGTAAGTTGAAAGTTGAAAGTTGAAACAACACAGAAACAATTCAGGCGAAGCCATGGAAGCACAGGAGTTTCTCCAGAACAGCTTCTGCCCCCAATTCCCCTCCGACACCATCACGCCCTCCAACGCTAACACCTCGGCCCCCGACCATTTCCTCGTCGAAGACTTCTTCGACTTCTCCAACAACGACGACGACGCCCTCACCGACGCCACCTACGACTCCCTCCCCGCAGACGACTCCCCCACCCTGACCACTCTCGACAGTGCCCACAACTCCACTTTTCCGCCCACCGACGCCCATTTCTCGGGTGACCTCTCCGTCCCGTATGATGATCTTGTGGAATTGGAATGGGTGTCGAAATTTGCGGAGGAATCGTTTTCGACCGAGGATATGCAGAAGCTGCAGCTGATATCAGGTGCGGGAGTGCAAAACGACGCCGCAGCATCGGAAACGCGTGACCCGAACCCAGTGCTGTTCAACCCGCAAGTGTCGGTTCGGGGCAAGGCCCGGAGCAAGCGGACACGTGGTCCCCCATGCAACTGGACCTCCCGTCTCGTTGTCCTCTCTCCCAACACCACAACGCCTTCTAACTCCGACGCCCTCAAGAAGCCCGCGCCACGGCGGAGGGACACCGCGGAAGGCGGTGAGGCTAGGAAGTGTCTGCATTGCGCCACAGACAAGACCCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAAACTCTCTGCAATGCCTGCGGAGTGAGGTACAAATCGGGCCGGTTGGTGCCCGAGTACAGGCCCGCAGCGAGCCCAACCTTCGTTCTCACCAAACACTCTAACTCGCACCGCAAAGTGCTTGAGCTTCGGCGCCAGAAGGAAATGGTGAGGGTCCAGCATCAGCAGTTGCTCCAACTGCAACATCAGCAGAACATGATGTTCGACGTCTCATCCAACGGTGAGGATTATTTGATCCAACACCACATGGGCACTGATTTCACGCACCTCATCTAGTACAAGTACCTTTTCATATTTTGTAGCCTTCCTTAGAAATCTATTTAATTTCTTTTTTTTCTGTAACTTCAAATTTTAAGTTTATGCTATAGCTGTAATGCTTCTTCATGTCA 1158 0.5406 MEAQEFLQNSFCPQFPSDTITPSNANTSAPDHFLVEDFFDFSNNDDDALTDATYDSLPADDSPTLTTLDSAHNSTFPPTDAHFSGDLSVPYDDLVELEWVSKFAEESFSTEDMQKLQLISGAGVQNDAAASETRDPNPVLFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTTTPSNSDALKKPAPRRRDTAEGGEARKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQHQQLLQLQHQQNMMFDVSSNGEDYLIQHHMGTDFTHLI 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02240 311 SMART GATA_3 196 246 IPR000679 GO:0006355|GO:0043565
Pste2g02240 311 Pfam GATA zinc finger 202 235 IPR000679 GO:0006355|GO:0043565
Pste2g02240 311 MobiDBLite consensus disorder prediction 166 182 - -
Pste2g02240 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 198 260 - -
Pste2g02240 311 MobiDBLite consensus disorder prediction 59 83 - -
Pste2g02240 311 MobiDBLite consensus disorder prediction 59 81 - -
Pste2g02240 311 CDD ZnF_GATA 201 248 IPR000679 GO:0006355|GO:0043565
Pste2g02240 311 FunFam GATA transcription factor 192 280 - -
Pste2g02240 311 MobiDBLite consensus disorder prediction 127 197 - -
Pste2g02240 311 ProSiteProfiles GATA-type zinc finger domain profile. 196 232 IPR000679 GO:0006355|GO:0043565
Pste2g02240 311 PIRSF Txn_fac_GATA_plant 4 293 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pste2g02240 311 PANTHER GATA TRANSCRIPTION FACTOR 23 275 - -
Pste2g02240 311 ProSitePatterns GATA-type zinc finger domain. 202 227 IPR000679 GO:0006355|GO:0043565
Pste2g02240 311 Gene3D - 193 274 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02240 Pste-Chr2 22456313 22457678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02240 30 311 C2C2-Gata Transcription Factor Family AT4G32890 47.712 2.54e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste2g02240 GATA 2.7e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02240 2 22456313 22457678 Pste2g02240 2 22456313 22457678 ECH