Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02226 TGGTCTAAATCTCCCGTGGAAAAATTGATAAAAGTCCAATCTCTGAATCTCCCTTTGTATGGTTCCCTTTTAGGACTTTTTGGTGCCCATAAATTGGAGTTGCTCCTTTATCCAAAGACCATGTCGGTGGTGGCTGATAATTCTGCCAACAATGGAAACCACCAGGTGGTTCTGAATGTAAACAGTGATGCCCCCAAAAAGTATGCCGAACCAGCCAACCAAGACTGTGTACCTCTTCTGCAGAAGTTGGTAGCAGAGGTGGTGGGGACGTACTTCTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTGAACCTTGACAAGGACAAGGTGATCACACAACCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGTTTACTCTGTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCCGTACCAGCTTATGTGATAGCTCAGATGGTTGGATCCACACTTGCTAGTGGGACTCTCAGACTTATATTTAGTGGCAGGAATGACCATTTTACAGGAACACTCCCCGCCGGTTCTGATTTGCAATCTTTTGTTATCGAATTCATAATCACTTTTTACCTCATGTTTGTGATTTCTGGAGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCAGGGCTTGCAGTTGGATCTACGGTACTGCTAAATGTGATGTTTGCCGGGCCAATAACAGGAGCATCAATGAATCCTGCAAGAAGCTTAGGACCTGCTATTGTGCACAATGAATACAGAGGAATATGGATATATTTGGTGTCTCCAACTCTTGGAGCTCTGGCTGGTACATGGGCCTACACTTTCATCAGGTACACTAACAAGCCAGTGCGTGAAATCACCAAAAGTGCCTCTTTCCTTAAAGGTGTTTTAAACGCAAACTGTGATGCCTCGAGAAGTGTTGACGACATCCATGTCTCTGTTCCCCTTTTGCAGAAGTTGGTAGCAGAGTTGGTGGGGACGTACTTGTTGATATTTGCAGGGTGTGCTTCGGTGGTGGTAAACCTTGACAACGCCGACATCATAACACTACCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTTTTGGCTTATTCTCTTGGTCACATCTCTGGTGCTCATTTCAACCCTGCTGTCACCATTGCTCATGCATCCACCAAAAGATTTCCATTGAAAGATGTACCAGCTTATATACTAGCCCAGTTCGCGGGATCCTTGCTTGCCAGCGGCACTCTCAGACTTCTTTTCAGAGGCAAGGCTAACCAGTTTGTTGGCACACTCCCCACTGGTTCTGACTTGCAAGCTTTTGTGCTCGAATTCATTATCACTTTCTTTCTCATGTTCGTCATTTCTGGAGTTGCCACCGATAACAGAGCGATTGGCGAGTTGGCAGGGCTTGCAGTTGGGTCTACGGTACTGCTAAATGTGCTGATTGCCGGACCAATAACAGGAGCATCAATGAATCCTGCAAGAAGCTTAGGGCCTGCAATATTGCACAGTGAATACAGAGGAATATGGATATACGTTGTGTCACCAATTCTTGGAGCATTGGCTGGGACATGGGTCTATACTTTGATAAGTTTAACAAAGGTTAGCAAAGTCTTCTTTAGTAAGTACCAG 1620 0.4543 WSKSPVEKLIKVQSLNLPLYGSLLGLFGAHKLELLLYPKTMSVVADNSANNGNHQVVLNVNSDAPKKYAEPANQDCVPLLQKLVAEVVGTYFLIFAGCASVVVNLDKDKVITQPGISIVWGLTVMVLVYSVGHISGAHFNPAVPAYVIAQMVGSTLASGTLRLIFSGRNDHFTGTLPAGSDLQSFVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVHNEYRGIWIYLVSPTLGALAGTWAYTFIRYTNKPVREITKSASFLKGVLNANCDASRSVDDIHVSVPLLQKLVAELVGTYLLIFAGCASVVVNLDNADIITLPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPLKDVPAYILAQFAGSLLASGTLRLLFRGKANQFVGTLPTGSDLQAFVLEFIITFFLMFVISGVATDNRAIGELAGLAVGSTVLLNVLIAGPITGASMNPARSLGPAILHSEYRGIWIYVVSPILGALAGTWVYTLISLTKVSKVFFSKYQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02226 540 ProSitePatterns MIP family signature. 374 382 IPR022357 -
Pste2g02226 540 PANTHER AQUAPORIN NIP2-1 310 530 IPR034294 -
Pste2g02226 540 CDD MIP 81 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Pste2g02226 540 Gene3D Glycerol uptake facilitator protein. 299 535 IPR023271 -
Pste2g02226 540 SUPERFAMILY Aquaporin-like 311 532 IPR023271 -
Pste2g02226 540 Pfam Major intrinsic protein 312 523 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 Pfam Major intrinsic protein 78 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 CDD MIP 317 526 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 317 336 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 356 380 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 393 412 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 438 456 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 469 491 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 PRINTS Major intrinsic protein family signature 506 526 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pste2g02226 540 SUPERFAMILY Aquaporin-like 78 286 IPR023271 -
Pste2g02226 540 NCBIfam MIP family channel protein 321 523 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02226 Pste-Chr2 22345373 22355124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02226 295 529 Major Intrinsic Protein MIP AT5G37820 57.500 1.55e-87 271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03079 3 23605814 23607911 Pste2g02226 2 22345373 22355124 PCT