Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02216 ATGGCTTCAGGAGCAATTTTTTCGTCGCTCCGGCGGAGGAGGTCACCGACGTTGGAAGCGTTTTTGGCTCCCGTTGACCTGAGCGACGTCGCTTTGGTTCAGACCCTTGTCTCTGTCGCCAACGAGATTGTTTCATGTTTTTCAAAGCGCTGTTTCTTCTTTCAGCGCAAGAACTCGCGGTCTCTGATCCGAAGAGTCGAGGTTTTTCAGTTGCTTTTAGAGTATTTGCGTGATTCTGATTCTTCGTGTCTTCCACCCACGGCGGTGCTTTGTCTCAAGGAGCTCTACCTCTTGCTCTACCGCTCTAAGATTCTCCTGGATTACTGCGCCCAATCGGGTAAGTTGTGGCTCTTGCTTCAGAACCATTCCATCTCTGGTCACTTCCATGATCTGAACCAGGAAATTTCGACCCTTTTGGATGTTTTTCCTCTTAAGGATGTTTTGTTGAGTAAGGATGTTAGGGAACAGGTTGAGCTGTTGCAAAGGCAGTCGAGGAGGGCTAAGCTTTTTATAGATACGAAGGATGATGCTCTCAGGGTTCGGTTTTTTTCCTTTCTTGATGAGTTTGAGAAAGGAAGGAGTCCTGATTCTGCTGAATTGAGGTCTTTCTATGTTGAGAATTTGCAGATTGTGGATGCGGATAGTTGTAGGACTGAAATTGAGGCTTTGGAGGAGCAGATTGTTAATCATGAAGGTGACATTGAGCCTACTATTTCAGTGCTCAATGGGTTGGTGGCTATGACTAGGTATTGCAGGTTTTTGCTTTTTGGGTTTGAGGAGGACGAGGTTGGTTTTTTTGAAAGTGGAAGTCAGAAGAAGCCTAAGAAGAGGTTGATTACTAAGGAAATTGCTGAAACGTTTTTGACCGTCCCTAAAGACTTTTGCTGTCCAATTTCATTGGATTTGATGAGAGATCCTGTTATAATTTCCACGGGTCAAACATATGATAGGAGTTCGATTTCGAGGTGGATGGAAGAAGGGCATACTACTTGCCCCAAAACAGGCCAAATGCTTGCTCACACTCGCCTTGTTCCCAACCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGCACTGCACATGGAGTTCCTCTTGAGGCACCGGACGTGATGGATGTGATGGGTGAAGCTTTTCCATCGGCTTGTCCCACCAAAGCTGCCCTTGAAGCCAACAGAGCCACGGCTACTCTTCTCATTCAACAGCTCGCTGGTGGCTCACAATCTGCCAAGACTGTGGCTGCTCGGGAGATTCGCTTGCTTGCAAAAACTGGAAAGGAAAACCGTGCCTTCATTGCAGAAGCAGGCGCAATTCCTTATCTTCGTAATTTGCTTTCATCACCTAATGCTGTTGCTCAGGAGAATTGTGTGACTGCACTACTCAATTTATCCATTTTTGACAAGAACAAGAGTAGGATCATGGACGAGGAAGGGTGTCTAGGATCAATTGTTCATGTGTTGAGATTTGGACACACCACAGAGGCAAGGGAAAATGCTGCTGCCACGTTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAAATAATTGCAGATGAGATGGGAGCGGTTGAAGCCCTTGCAGGGCTGTTGCAAGAGGGGACTCCAAGGGGAAAGAAGGATGCTGTGACAGCTTTGTTCAATCTTTCTACACACACTGAGAATTGTGTTAGAATGATAGAGGCTGGGGCAGTGACAGCTCTCGTCAGTGCTTTGGGGAATGAAGGAGTTGCAGAAGAAGCAGCCGGTGCGTTGGCCTTGATCGTCCGCCAACCTGTTGGGGCCAAGGCAGTGGTGAATGAGGAAGCAGCAGTGGCTGGATTAATCGGAATGATGCGTTGTGGAACACCAAGAGGTAAAGAGAATGCCGTTGCAGCATTGCTCGAGTTGTGCCGTAGTGGAGGCGCTGCTGCTACAGAAAGAGTTGTCAAGGCGCCTGCTTTGGCTGGATTACTTCAAACCCTTCTTTTCACCGGGACAAAACGTGCAAGAAGAAAAGCAGCTTCACTTGCAAGAGTGTTTCAGAGATGTGAGCATGCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATATGCTAGCAATTCAACTACAACTAGGGATACTAGCTTTGCCGGTGATGTTTCAGTACCAATGTCCATTTCTGTTTTATAG 2148 0.4702 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALVQTLVSVANEIVSCFSKRCFFFQRKNSRSLIRRVEVFQLLLEYLRDSDSSCLPPTAVLCLKELYLLLYRSKILLDYCAQSGKLWLLLQNHSISGHFHDLNQEISTLLDVFPLKDVLLSKDVREQVELLQRQSRRAKLFIDTKDDALRVRFFSFLDEFEKGRSPDSAELRSFYVENLQIVDADSCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFGFEEDEVGFFESGSQKKPKKRLITKEIAETFLTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHTRLVPNRALRNLIVQWCTAHGVPLEAPDVMDVMGEAFPSACPTKAALEANRATATLLIQQLAGGSQSAKTVAAREIRLLAKTGKENRAFIAEAGAIPYLRNLLSSPNAVAQENCVTALLNLSIFDKNKSRIMDEEGCLGSIVHVLRFGHTTEARENAAATLFSLSAVHDYKKIIADEMGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVSALGNEGVAEEAAGALALIVRQPVGAKAVVNEEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHASLHYGGLGVGYAYASNSTTTRDTSFAGDVSVPMSISVL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02216 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 434 476 IPR000225 GO:0005515
Pste2g02216 715 ProSiteProfiles U-box domain profile. 289 363 IPR003613 GO:0004842|GO:0016567
Pste2g02216 715 Pfam U-box domain 290 360 IPR003613 GO:0004842|GO:0016567
Pste2g02216 715 CDD RING-Ubox_PUB 291 343 IPR045210 -
Pste2g02216 715 FunFam RING-type E3 ubiquitin transferase 271 369 - -
Pste2g02216 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
Pste2g02216 715 Gene3D - 393 669 IPR011989 -
Pste2g02216 715 SMART arm_5 423 463 IPR000225 GO:0005515
Pste2g02216 715 SMART arm_5 589 629 IPR000225 GO:0005515
Pste2g02216 715 SMART arm_5 465 506 IPR000225 GO:0005515
Pste2g02216 715 SMART arm_5 508 548 IPR000225 GO:0005515
Pste2g02216 715 SMART arm_5 549 587 IPR000225 GO:0005515
Pste2g02216 715 SUPERFAMILY RING/U-box 279 363 - -
Pste2g02216 715 Gene3D - 27 145 IPR036537 GO:0007166
Pste2g02216 715 PANTHER U BOX DOMAIN-CONTAINING 57 674 - -
Pste2g02216 715 SUPERFAMILY ARM repeat 395 671 IPR016024 -
Pste2g02216 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Pste2g02216 715 Coils Coil 213 233 - -
Pste2g02216 715 Pfam Armadillo/beta-catenin-like repeat 424 462 IPR000225 GO:0005515
Pste2g02216 715 SMART Ubox_2 293 356 IPR003613 GO:0004842|GO:0016567
Pste2g02216 715 FunFam RING-type E3 ubiquitin transferase 366 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02216 Pste-Chr2 22186364 22188511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02216 1 714 U-box Gene Family AT1G29340 69.410 0.0 943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02216 2 22186364 22188511 Pste2g02216 2 22186364 22188511 ECH