Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02198 ATTTTGGATGTGCGTTGAGAAAATGTTGGGGGTTTAAGGAAGAAAAAGCCTAGAAAAACCTTCACATTAGTTGCTAGCTTCTGGTCCAAAACGGCGCGTTTTTGTTGTTGTGAAGGTAAATGATGAACTGGGAAATTGACTAGTGCTGCGCCCTCCTAACACCGGCGGCGGCAGAAACACCGCGGGACGGCGATCTCACGAGATGACTCAACCAACGGTGATACTTGCCACTGCGAGTTATGATCACACCATTCGTTTTTGGGAGGCCAAGAGTGGCCGTTGCTACCGCACCATTCAATATCCTGATTCTGTCGGTTTGCCTTTACTCTTTTCTCATTTTATTAGTGCTACTTCAAAATTTCAAGTAAACCGGCTTGAGATAACCCCAGATAAACGTTACCTGGCTGCAGCTGGCAATCCTCACATACGACTGTTTGATGTTAACTCAAATAGTCCTCAGCCGGTAATGAGCTATGACTCACATACCAATAATGTAATGGCAGTTGGGTTTCAATGTGATGGTAATTGGATGTATTCTGGCTCAGAAGATGGCACAGTTAAGATCTGGGATTTGAGGGCACCGGGTTGTCAAAGGGAATATGAAAGTCGTGCAGCTGTAAACACTGTTGTGCTACACCCAAATCAGACTGAACTAATATCTGGAGACCAAAATGGCAACATCCGTGTGTGGGATTTGACAGCCAATTCTTGCAGTTGTGAATTGGTACCAGAGGTGGATACTGCTGTACGCTCTTTAACAGTAATGTGGGATGGAAGCTTGGTAGTTGCTGCAAATAATCATGGGACATGTTATGTGTGGCGTTTGTACTTGGCAACTGCATCTTCTGATCATACTGTCAAAATATGGAACGTTGATGGTTTTACGCTAGAAAAAACTCTTATAGGTCACCAACGCTGGGTGTGGGACTGTGTCTTCTCTGTGGATGGTGCTTATCTTATTACAGCTTCCTCTGATACAACTGCTAGGCTATGGTCTATGTCAACTGGTGAAGATATTAAAGTTTACCAAGGGCATCATAAAGCCACAATTTGCTGTGCCCTACACGATGGGGCTGAACCCGCAACTTCCTGAGACATCAGATACACATCTTGTTTTGTAAATAATCTGCCTTTTTGGTCTTTCAAGTTCTTTGATGGTATGCAAGTTTATTTGATCAAAAACTTTTTACTAATACTGATAGGAATGAAAGACATTGTCCGGACATGAGAATGTGATCGAAAATTGGTTTTATCAAATAAAAGAAAATCA 1270 0.4268 MTQPTVILATASYDHTIRFWEAKSGRCYRTIQYPDSVGLPLLFSHFISATSKFQVNRLEITPDKRYLAAAGNPHIRLFDVNSNSPQPVMSYDSHTNNVMAVGFQCDGNWMYSGSEDGTVKIWDLRAPGCQREYESRAAVNTVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSTGEDIKVYQGHHKATICCALHDGAEPATS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 132 173 IPR001680 GO:0005515
Pste2g02198 296 Pfam WD domain, G-beta repeat 52 79 IPR001680 GO:0005515
Pste2g02198 296 Pfam WD domain, G-beta repeat 86 123 IPR001680 GO:0005515
Pste2g02198 296 Pfam WD domain, G-beta repeat 129 164 IPR001680 GO:0005515
Pste2g02198 296 Pfam WD domain, G-beta repeat 230 265 IPR001680 GO:0005515
Pste2g02198 296 Pfam WD domain, G-beta repeat 200 223 IPR001680 GO:0005515
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 125 IPR001680 GO:0005515
Pste2g02198 296 ProSitePatterns Trp-Asp (WD) repeats signature. 8 22 IPR019775 -
Pste2g02198 296 ProSitePatterns Trp-Asp (WD) repeats signature. 110 124 IPR019775 -
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 132 165 - -
Pste2g02198 296 ProSitePatterns Trp-Asp (WD) repeats signature. 151 165 IPR019775 -
Pste2g02198 296 SMART WD40_4 40 79 IPR001680 GO:0005515
Pste2g02198 296 SMART WD40_4 167 207 IPR001680 GO:0005515
Pste2g02198 296 SMART WD40_4 226 265 IPR001680 GO:0005515
Pste2g02198 296 SMART WD40_4 84 123 IPR001680 GO:0005515
Pste2g02198 296 SMART WD40_4 126 164 IPR001680 GO:0005515
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 30 IPR001680 GO:0005515
Pste2g02198 296 PANTHER G BETA-LIKE PROTEIN GBL 6 208 IPR037588 GO:0031929|GO:0031931|GO:0031932
Pste2g02198 296 Gene3D - 5 290 IPR015943 GO:0005515
Pste2g02198 296 CDD WD40 7 289 - -
Pste2g02198 296 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Pste2g02198 296 PRINTS G protein beta WD-40 repeat signature 110 124 IPR020472 -
Pste2g02198 296 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 232 IPR001680 GO:0005515
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 125 - -
Pste2g02198 296 SUPERFAMILY WD40 repeat-like 7 288 IPR036322 GO:0005515
Pste2g02198 296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02198 Pste-Chr2 22001521 22006821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02198 42 275 U-box Gene Family AT2G33340 26.141 5.76e-12 63.9