Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02090 GTTATCTTTGCACTTATATTCCATATCCTCCATGCATGGTGATAAGTAGTAGTATTTAGAAACCTCTCTCTCCTTATTGAATCTCCTTTATCCTATTTTGCAGTATCCCTTAAGTCATTAATTGTTTCGTTTCCAAGTGAACGATATAACTTATTTAAAGCATATCAAAACCTAATTGAAGAAGAGTTTGTCTCTCCATGCAAAAGGAAAAGGAATCAATTATCAAGAAGGGGATGACTGATATAGAAATGGAAGGAACTCGTGCAAAAGAGGAAACCCTACCACCAGGATTTCGATTTCATCCTACTGATGAAGAACTTGTCACTTGCTATCTCGTAAATAAGATATCGGATTCTAATTTCACAGGCAGAGCAATAACTGATGTAGATCTTAACAAATGTGAGCCATGGGAGCTTCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTGTGAGAGACCGTAAATACCCAACGGGAGTGAGAACAAATCGGGCAACGAACACGGGGTATTGGAAGACAACAGGCAAAGACAAAGAGATCTTCAACAGTGCAACATCAGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCCAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCTAAATCCACCTTTAGAACTAACAGGCAGGATGAATGGGTGGTTTGCCGGGTATTCAAGAAGAGTGGTGGTGCAAAAAAGTACCCTTCTTCTAACCATGCAAGAGCAGTGAATCCTTACAGCTTGGAAATAGGACCAAATATTATGCCACCGCCAACTATGCAATTGGGAGATCCTACTGCTCATTTCCTTTATGGACGGAATTACATGAACAGTTCAGAGTTAGCTGAACTTGCTAGGGTTTTAAGAGGGGGCGGATCAAGCAGTAATGTCAACCTACCAACAATTCAATCCCAGTTGAGCTACCCTACAACAGCAGGAGGTGGAGGGTTCACCATTTCAGGGATCAATCTGAATCTTGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTGCGCCCAATGCAACCTCCAATGCCTCAATTACTTGATGTCAATTCCAGCGTGATCACAACCAGTTCTCTGGGTGCCGAGAATGTAGACTATGGATCAGAAATGAGTAACATGAATTCTCATGGCAATAGGTATATGGGCGTCGACCATTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA 1247 0.4218 MQKEKESIIKKGMTDIEMEGTRAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSVRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSATSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNRQDEWVVCRVFKKSGGAKKYPSSNHARAVNPYSLEIGPNIMPPPTMQLGDPTAHFLYGRNYMNSSELAELARVLRGGGSSSNVNLPTIQSQLSYPTTAGGGGFTISGINLNLGGGGATATTQPILRPMQPPMPQLLDVNSSVITTSSLGAENVDYGSEMSNMNSHGNRYMGVDHCMDLDNYWPSY 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02090 349 ProSiteProfiles NAC domain profile. 28 177 IPR003441 GO:0003677|GO:0006355
Pste2g02090 349 SUPERFAMILY NAC domain 22 177 IPR036093 GO:0003677|GO:0006355
Pste2g02090 349 FunFam NAC domain-containing protein 100-like 37 181 - -
Pste2g02090 349 Gene3D NAC domain 37 180 IPR036093 GO:0003677|GO:0006355
Pste2g02090 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 25 206 - -
Pste2g02090 349 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02090 Pste-Chr2 21026334 21028482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02090 22 349 NAC Transcription Factor Family AT2G24430 54.728 9.10e-116 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g02090 NAM 2.4e-40 No_clan