Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02025 GCATAAGGGAAAAGGGAGCATGAATTACAAGGAGGAATATGAGTACGAAGAAGAGGTGGAGGTGGAAGTGGAGGAGGAGGAGGATGATGAGGAAAGTGATGGAGACGAGGGTAGGAAAAAGAGGGTGATTACTAATCACAGTAGTAGTAGGAGAGGGTCCAGAGCTGGAGGTTCAGTTCCACCTTCATGTCAAGTCCAGGGTTGCAACGCTGATCTTAGTGATGCTAAGCCCTACCACCGCCGCCACAAGGTTTGTGAGTTCCATGCCAAGGCTTCTGCCGTACTCATTGCTGACCACCACCAACGCTTTTGCCAACAATGTAGTAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAATGAAAGGCGTCGCAAAAATGCATCTGAATATCATGGACTTTGATTTGGATAACAATGAATATTGATGCAACATAATATAAAAATTACAAAAAAAGAAAAAAAAAAAGAGAAGCCATTTGTCATTAGGTGAGCAAGGCAAGGCGAGCAACAATAAATTATTTAAATAAAGTTTCCCCTAAAACCCTCCATGTTTTAATTAGCCTATGAGAAAGCTCTTTATCTTTTATCAAATTTTTTTCATATATATAAATTGTCATGGTGGTTGTATTCAAGAGAAT 671 0.4009 MNYKEEYEYEEEVEVEVEEEEDDEESDGDEGRKKRVITNHSSSRRGSRAGGSVPPSCQVQGCNADLSDAKPYHRRHKVCEFHAKASAVLIADHHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEYHGL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02025 138 Gene3D - 47 118 IPR036893 GO:0003677|GO:0005634
Pste2g02025 138 MobiDBLite consensus disorder prediction 7 27 - -
Pste2g02025 138 MobiDBLite consensus disorder prediction 1 58 - -
Pste2g02025 138 ProSiteProfiles Zinc finger SBP-type profile. 54 131 IPR004333 GO:0003677
Pste2g02025 138 FunFam Squamosa promoter-binding-like protein 14 47 118 - -
Pste2g02025 138 PIRSF SBP 1 138 IPR017238 GO:0003677|GO:0003700|GO:0009908
Pste2g02025 138 Pfam SBP domain 57 130 IPR004333 GO:0003677
Pste2g02025 138 SUPERFAMILY SBT domain 55 135 IPR036893 GO:0003677|GO:0005634
Pste2g02025 138 MobiDBLite consensus disorder prediction 42 58 - -
Pste2g02025 138 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 30 132 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02025 Pste-Chr2 20502917 20504678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02025 57 134 SBP-box Gene Family AT2G33810 73.077 1.16e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste2g02025 SBP 4.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g02025 2 20502917 20504678 Pste2g02025 2 20502917 20504678 ECH
Pste3g03882 3 31585190 31587654 Pste2g02025 2 20502917 20504678 PCT