Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g02008 TCTGTATCAAACCTCTTCGACGACTCCTTTCTCACCTCTCTGTTCGTTCCACGTTTCAAACGGAGAACAACCACAATCACAACAGCAGCAACGGAAGGATGGATGAAGAAAATGCTTGGTTGTATGGTAGAGCGCTGAAATAGCGGAGACGAAGTCTATGTGATTGTGCGGAGAATATTTGATGCAAACCTTGGTCCTTTCAAAACGAGGCGTCCTCCCACTTTTTCTGTTCACGCCCCTTTTTACTCTTTTTTTCTTCTTCCTTTCTCCTTCCTTCACTTATTTCACTCTTAAAAACATGTTTCCTCGAGCTTTGTGTTTCTCTTGAATACAATGGTTTTGAGGAATTGGGCTTCTCTGTTTCGTCGTCAAAAAATGTTGCTTTGCTGTTTGACTGATCACGCTTTCTGACGGTTGCTGTTCATCGTCATCTGATCGTCTCTTGATTTGAAGGGAGTATGCCATTGATGGATGAATATTCTGGAAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCATGTGTTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGTAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCCACTGGCAAGGAAGCAATTGGAAGCTCTTCTAGAACTTTTTCCAAGACTAATAGCCCAGGAAAACCGCTTATAAAGCCTCGGAAAATAGCATCATCTCATTTAGAGACAGATTCATCTGAAAATAATAGTGTACAGGATGAATCAGAAGTTTCAAAACTCACCCCTCCCCCCGGAAAAAGTCAGACAGGATTTCAAGCTGAATTGGAAAATACAGTTTCTGGTAATGTCATGATGGAAGTAGGAAGCTCTAGTGTAGTATCCAATATAAGATCTCGGAGGAATTTTCATTCAAAGCCTGGATTACGTGGTCAAGAAATTAAGAGCACCGGTCCAGTGACACGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATTCTGTTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCCTAACAAAAGGAAGGATGTGATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTTCTAGAGGAAAGAAAATGAGTGCTTCTTCATTAGAAGCACGCAATTCTTCAAGAAATGGCATATCTATCTCTGAATCAACTCAATCAAGAATGCCTAGGAATACTCCTCACAGGGACAGGATAGACAGCAACATGGCACCGGTTAGAACTCGGAAATCAATGAGTAGCCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTCTCTCGTAATGAGTCCCTTGTCGTGATACCTTCTTTACCTCGATCCAGTGGTCATAATATTCCTGGTGTATCACATCATACTTCTGTGGATAGTTCCTTGAATTGTCCTAGCTCTCATAGTAGACCAGGTACTAGCAGTGAAGAGTTATATGGTGTTATGCCTGTATCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATGGATAGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACAAATGAGCAAATTCGTTTATTGGAATCCAACTTGTTCCTCACTGGACTAAACTTCTACGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAACTACTGGCTCTTGAAGAGAGGATGGGTACTGTGAGTACAGCTCTAACAGAGGAAGCTCTATCAGAATGCATAACCAAAACTTTCTATCAGTCCTCGCCATCTGAGAAAGCAGCTGAGACTTGCAATGAAGATAAGAATGATAGCGATACCAAATGTAGCATTTGCCAGGAGGAATATTTGATTGCGGATGAAATGGGGAGTTTGCAGTGTGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTACGGCTAAAGAACTGGTGCCCTGTTTGCAAAGCATCAGTGGTTCCCTCAAATTCATCATCCCCATCCCAATCTTAGGTCAGAGGAGGGAGACCGATTTCTTTGTACCCCTCTTTCTGTTCATTTTTTTTATCACTTCTGTACAAAATACAGTTGCTCCCCACTCATTTTATAATTTTTTGGGTCTTTTGTACATAGCCAATATTTTAATCCCCGTTATACAATAAACCAAGTCACTGGCTTGATAGACTGGAGATTCTAAATCTACGGCTGCAATATCTATGGCCTTCATCTTATGTTTTATTTTTTTTTAAATCCATACTTGACAATCGTTATGGAAATTGGAAG 2384 0.4153 MPLMDEYSGKRAIDGVVVPRKGMGHVFRDTANARDRNGQVCSRITCSSRVNSPKGAQIGSSEKGKSLKPSIQSSSTGKEAIGSSSRTFSKTNSPGKPLIKPRKIASSHLETDSSENNSVQDESEVSKLTPPPGKSQTGFQAELENTVSGNVMMEVGSSSVVSNIRSRRNFHSKPGLRGQEIKSTGPVTRAGTSRYGLRNLKCNSVSDVIPAGCSPSDSTPNKRKDVIKKRNCEGEGSSTSRGKKMSASSLEARNSSRNGISISESTQSRMPRNTPHRDRIDSNMAPVRTRKSMSSHTRGRLSSQGNANPVSRNESLVVIPSLPRSSGHNIPGVSHHTSVDSSLNCPSSHSRPGTSSEELYGVMPVSPSEYGLTHSLMNLDSFRRRYNMDSIAEVLLALERIEQDVELTNEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEEALSECITKTFYQSSPSEKAAETCNEDKNDSDTKCSICQEEYLIADEMGSLQCEHMYHVVCIQQWLRLKNWCPVCKASVVPSNSSSPSQS 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g02008 551 FunFam E3 ubiquitin-protein ligase arkadia 456 542 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 207 359 - -
Pste2g02008 551 SUPERFAMILY RING/U-box 486 543 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 169 192 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 49 94 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 221 237 - -
Pste2g02008 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 77 540 IPR045191 GO:0061630
Pste2g02008 551 MobiDBLite consensus disorder prediction 238 270 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 110 138 - -
Pste2g02008 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 480 550 IPR013083 -
Pste2g02008 551 Pfam Ring finger domain 495 537 IPR001841 -
Pste2g02008 551 MobiDBLite consensus disorder prediction 49 138 - -
Pste2g02008 551 Coils Coil 391 418 - -
Pste2g02008 551 ProSiteProfiles Zinc finger RING-type profile. 496 537 IPR001841 -
Pste2g02008 551 SMART ring_2 496 536 IPR001841 -
Pste2g02008 551 MobiDBLite consensus disorder prediction 287 355 - -
Pste2g02008 551 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g02008 Pste-Chr2 20275911 20280519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g02008 380 541 C3H Transcription Factor Family AT2G15530 38.889 5.20e-30 123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00557 8 2886526 2890297 Pste2g02008 2 20275911 20280519 PCT