Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01989 ATGACTGCGAACGAACGGGATAGGGACGACTGCCACCGTAGAGGCACTTCACTGTCTTCTTCATCCCAATTGAAACTTCACACAGAGACACCAAAGCTGTTTTCTTTTTTCATCTGGGTATGTGATTCCCTTCTCCTTATCCTCTTTGCTCTCTTGGATTTCATAATCTCCGCCACCAAACCTCCACATCCATGGTCTAAAGAACTACTAGTGACCAAAATTGTGAAAAGGGGTTCCTTGATTTTCATGGCATTTCAGCACTACATTTCCCGGGATTTGAAAACCATCCCGAATACTGTAACTGAGACAGAAAACTCCAATGGCTGTTTTGATTGCAACATCTGCTTAGACTTTGCACATGAACCAGTAGTGACTCTATGTGGCCACCTCTACTGCTGGCCATGCATCTACAAGTGGCTTCATGTCCAAAGTGATTCTCTTGCACCTGATGAGCATCCACCATGCCCCGTTTGCAAGGCTGATATATCCAATAGCACAATGGTCCCACTCTATGGCCGTGGCCATGCCACAGCTGAAGGCAAAACATCTTGTGATGTCTTCGTACCACCAAGACCACCTGCTTCATGTGCTCAAACCCTTTTGGCGGCATCATCTCAAAGGGGTCAACACCTTCCATATCGTAATCCTTATCAGAGTCATTACTTCAGCTCTCATCCATACCAAGAAGAGGATGATGCCACTTCACAAATGCTCAATCTTGGATCCCACCACCCTTTGACTGGGATGTTTGGGGAGATGGTTTATGCCAGAGTGTTTGGCAACTCTGAAAATTTGTATGCATACCCCAATTCTTATCAGCTGATGGGAAGTGCTACCCCTAGATTGAGAAGGCAAGAGATGCAGGCACACAAATCTTTGAACAGAATTTCTATTTTTCTCTTTTGCTGCTTCCTTCTTTGTCTTGTTGTCTTCTAAGTGAGCACTCAGGATTATTTTCTCTCATTCTCTATCTTATACATTGTAAAGAAGCATGAATGCAAGCTTATAAAAAAAAGAAGCATGAAGAATGCAA 1033 0.4376 MTANERDRDDCHRRGTSLSSSSQLKLHTETPKLFSFFIWVCDSLLLILFALLDFIISATKPPHPWSKELLVTKIVKRGSLIFMAFQHYISRDLKTIPNTVTETENSNGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSDSLAPDEHPPCPVCKADISNSTMVPLYGRGHATAEGKTSCDVFVPPRPPASCAQTLLAASSQRGQHLPYRNPYQSHYFSSHPYQEEDDATSQMLNLGSHHPLTGMFGEMVYARVFGNSENLYAYPNSYQLMGSATPRLRRQEMQAHKSLNRISIFLFCCFLLCLVVF 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01989 311 ProSiteProfiles Zinc finger RING-type profile. 112 159 IPR001841 -
Pste2g01989 311 Pfam Zinc finger, C3HC4 type (RING finger) 112 158 IPR018957 GO:0046872
Pste2g01989 311 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Pste2g01989 311 SUPERFAMILY RING/U-box 108 171 - -
Pste2g01989 311 SMART ring_2 112 158 IPR001841 -
Pste2g01989 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 218 IPR013083 -
Pste2g01989 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 99 308 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pste2g01989 311 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 88 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01989 Pste-Chr2 20100170 20105342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01989 94 297 C3H Transcription Factor Family AT4G27470 40.271 5.93e-47 156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01989 2 20100170 20105342 Pste2g01989 2 20100170 20105342 ECH
Pste3g03860 3 31077663 31078694 Pste2g01989 2 20100170 20105342 PCT