Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01940 ATGCATGGAAGATTAAGCTGGATGGATTCATTTTCAGGATCTGAGCAGCCACTACTCCCTCCAGGGTTTCGATTCCACCCCACGGATGAGGAACTCTTGGTTCACTACCTCAAGAAAAAAGCAGACTCTGTTCCTCTTCCTGTTGCCATCATCGCCGAGGTTGATCTCTACAAGTTTGACCCGTGGGAACTCCCAAGTAAAGCAAGGTTTGGTGATCAAGAGTGGTACTTTTTCAATCCCAGGGATAGGAAATACCCAAATGGGGCGAGACCTAACAGGGCTGCTTCTTCTGGGTATTGGAAAGCAACAGGAACTGACAAGCCCATACTTGCATCTGATACCCACCACAAAGTTGGCGTCAAGAAAGCCCTTGTTTTCTATCGTGGAAAACCTCCAAAAGGAGTTAAAACCAATTGGATCATGCACGAGTACAGGCTTGCCCACACTTCTACCTCAAAACCACCTTCTCTGCCTTCAAATCCTGCACATCCTACCAAGAAAAACTCCTTGAGGCTTGATGATTGGGTTTTATGCCGCATATACAAGAAGCGCAACACTACCATCCTGCCAAGGTTACCTTTGATGGAGCACAATAAGGAGGGTACTATGAGGCCGATGATGATTTCAACTTTGTCAATGGCTAATAATAATACTCATCAGAATTCCAAAACCATGTCTTCGAGAAGCGTAAGTTATGGATCCCAGCTGGGACTAGAAAATGATGATGACTTCTTTGATGGAATCGATCAGGGCATGCAGCAAGATATTTCTGATTTCCAGCAAGTCTCTTCAAAGGAAAACTCTCCTGTGAAAAGAGCACTCTTATCACAATTTTGGAATGACACAGAACCTTCCTCTTCAAGCAGGCGATTCCATTGTGATCTTAATAGGAGAGACAACACTGTTGGGGAAGACAATTCCTTCGTTTCTCTGCTTAGCCAACTTCCACAGAACACAACCTTTCAACCAAAAGCACTAGTTGGTCCTGCAGGGCATCAAGTATCGAGGCAACAGATTCAACTTCCATGTATCAATTGGAATGCTTAGGCTGGTTAATTTGGCTAAGGACTAAGGTAAATAACTAAATTAATATACGGGGTTTGACAATGTAGATGCCATTGTAATTTTAACTTTGGTTTTATTATTTTGCTCTCCCCGCTGTAGCCATGTATATAGAACACCCTAGAGAGAAAATGAGAGAGATCGTGACTGTACTGTATTTGTGAGTTTTGTCTTTTGAAGCTTACATTAAACTGAATTAAAA 1264 0.4272 MHGRLSWMDSFSGSEQPLLPPGFRFHPTDEELLVHYLKKKADSVPLPVAIIAEVDLYKFDPWELPSKARFGDQEWYFFNPRDRKYPNGARPNRAASSGYWKATGTDKPILASDTHHKVGVKKALVFYRGKPPKGVKTNWIMHEYRLAHTSTSKPPSLPSNPAHPTKKNSLRLDDWVLCRIYKKRNTTILPRLPLMEHNKEGTMRPMMISTLSMANNNTHQNSKTMSSRSVSYGSQLGLENDDDFFDGIDQGMQQDISDFQQVSSKENSPVKRALLSQFWNDTEPSSSSRRFHCDLNRRDNTVGEDNSFVSLLSQLPQNTTFQPKALVGPAGHQVSRQQIQLPCINWNA 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01940 348 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
Pste2g01940 348 FunFam NAC transcription factor 56 28 188 - -
Pste2g01940 348 SUPERFAMILY NAC domain 13 183 IPR036093 GO:0003677|GO:0006355
Pste2g01940 348 Gene3D NAC domain 28 187 IPR036093 GO:0003677|GO:0006355
Pste2g01940 348 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 260 - -
Pste2g01940 348 Pfam No apical meristem (NAM) protein 20 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01940 Pste-Chr2 19718081 19719570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01940 9 348 NAC Transcription Factor Family AT1G61110 50.975 1.52e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste2g01940 NAM 2.1e-39 No_clan