Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01934 CTTACCCCTTTGTCACCCCAAACCCTATTTAAACCTACCTCCACAATTCACGAACGACTTTGTCCTTTCTCTCTCCCCTTGCAAAGCACAACACGACGTTACGAAGAAAAGAAAAGTCGCATCACGAACCTTCTCAGAAACCTCCACGGATTCTTCACGAACTCGCACCCTGCATCACGCCTCTTTCCCTTCTAGAATGAGATTGAAATCCTCCTTGCGCTTCGATTTCAAGATTCGCCACTGGAGATTTTGCTTTATCGGCAACGACTTCTAAAAACAAACAAGCGACTTAGGGTTTTGATGCGATCAATCTCGTTAGGTTCTCGACGATGATGGCGGAAGAGGGATTCGATTACTCGTACCTGTTGGACGACGACGGAGACGCCGCCGATGACGATAAGCTCTGTATCGATCTGGACACTGTTATGAGCGTTCTCGACGAGGATATCGATCCTTCCGAGAGTAGTCCTGAGGATTTTTCAATTAAAAATATTTCACCTGGTGAACTTGGCATCCACAATAGTTTTCTACTTCAAAATGGGAATTCTGTGCTTGAATGTGAACATGAAAACCTGGGACCTTCATCACAGACTCTCTCTTCCCCAAATGCTCTTGCTGGTGGTTGCAGGGACTCCTCTGTGGTTGAAAGTGATGAAATTTGTTTCACAGACACAGCAGGAATTTCTAATAGTAAGATGCCTGCTTACATTGCAGACACAAGATTACCTGTTCCTGAGGCAAATTCAAGCAACATACCTGTCTTTGGAGATAATTTGAATCTGACTCTGTGGAAGTGTGAAAATGACAGCCAAATCAAGCATGTGGGATATGATGCAGAATCTGAACATGCTTCACATGGCTCTATCATTGCGAATTTTGATGTAAATTTTGGAGATTATGAAACCTATATGAAAGACATTATTGGACTTTCTGGTAAACAGGAAAATGACTCATGTACATCTTTTGAAATGTCGTTTGTGGATGCTGATAGATCTTCACATGTTGCAACTTCAACGGATTCTTCTATTTGTCAAGGTTCCAATGTTCCCAATGATTTTAGTGACTATTATCCATCTTTGAATTGTTGCCAAGGTATGGATGATAGACCTGTTGTTGCCAACACTTCTGGTTATTTATCTAATGGTGTTTATCCTCACATGTGGAAAAATGAAGAAATGAAGAGGAACATGAAGGTTGCTAAAATGGAGTTATTTGCTGATACAAGTAGTGGCATGCATTCCAGCATTAATGGCGGGATATCTTTTCAAGATACTCAATTTATGTTTGCAGATAGTAAATGTGCATCATTTTTTCCTAGTAATGTTCTCTTTGAAGAGCATGCATCAGTGCACCTCTCAACTTGTGCTTCATATATTTCAACTGAAGGTCAATCACTTAATGTCAAAGCCGAAAGAGACAAACTAATTTTACCTTACCAAAACTATGTTCACAGTGATGATGCTGAGTTCAATGTAGGTCAACAGATGAAACAGCTACCTGGTATTTTCCCTGCTGTTGGATGTCAGGGTAATGATATATTCAATTGTGAGGATCGTGTTACAATTGCCATGACTGAGAAAGCCAAATATTATCAAGATTCTATTGATGGAGCTGCCTATAACTTTTCAGGAAACATTGGAAATTTGAATTTAAAAGCATTTGATAAATCTTTGTATAATGTCCAGACATCAATTGCCTGTGGGAAACAGTATAATTGTGTTATAAGTGAAGGAGAGGGCAACACATTTGAACGGAGAAGTATTGATTCTCATCCTTCAAAAGGAAGTATTGTGAGATCCAATATTGAGGATGATTCTGATGTTTGCATTATTGAAGACATCGGTCACCCTGCACCTATAAGTCGATCAGCAGAGGTTGGGAATTCCCTTGATAGAGGTGGTTATACTCATTCTTATATGGTGGGAGGTATGAGGACCAAGTCGCGCGATGAGCAGTACATATTACGAGTTGCATTGCAGGTTGATACTTTTTCTTTGGAAGTTTTATCATCTGTAGCGGATCTATCCCAACCAAAGTCAGAGGTTAGTCCACCAGATGGACTGCTGGCAGTTCCTCTTTTAAGACATCAGGTTGCTTTGCTAGTCCAATCTTTGAATTATTCAGATGTTGTTTCTCCTGTTAAAATGGATTTATGTGGTACTCGTTCCTCGCTCCTTCATGCAATTTGTGCAGGGTGGTTGAAAAGCAAATTCCCCATATTGACCCTTAGTCACCTTATCCTTGCTGCCTTAGCAATCCAAAGAATTGCTTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCTGGTGGAATTCTTGCAGATGATCAGGGTCTTGGGAAAACAGTGTCTACCATTGCCTTAATATTAAAGGAAAGACCTCCAGTTCTGAATAAATGCAACAATGCACTAAAAAGTGAATTAGAAACATTGAATCTGGATGCAGATGATGATCATCTTCCTGAGAATGGTGTAATGAAGAATGAATCTAATACGTGTCAGGATATGTCTAGTAGAAATCCAAACAAGAACATGGGTTTGTTAGTGCATGCAAAGGGAAGGCCGTCTGCAGGAACCCTTATTGTTTGTCCAACTAGTGTCCTGCGACAATGGGCTGACGAGTTGCACAATAAGGTAACCTGCAAAGCAAATCTATCTGTGCTAGTTTACCACGGAAGCAATCGAACAAAAGATCCTTATGACCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTAGTTGACAAAGATGATGAAGAAAAAGGAACTTATGATGATGATCATGCAGTATCAAGTAAGAAAAGGAAATGCCCTCCTAGTTCTAAAAGTGGCAAGAAGGGATTGGACAGTGCAATGCTTGAGGCAGTTGCTCGTCCTCTTGCAAAAGTGGCTTGGTTTAGAGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCGAAGCGTAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTATAGTTACTTCAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAGTAGAAATCCATCAAAAGGATATAGAAAGCTACAAGCTGTCTTAAAAACAATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGGGAGCCTATCATTTCCTTGCCACCTAAATCCGTAGAGTTGAAAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCTAGACTAGAGGCAGATTCTCGAGCACAGTTTCAGGAATATGCTGATGCTGGAACCGTGAAGCAAAACTACGTTAACATTTTGCTGATGCTTTTGCGCCTTAGACAAGCATGTGATCATCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTCTGGAAATCTTCAGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACGATTATCTCTTCTAAAATGTTTAGAGGCATCCTTGGCCCTATGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTTTCAGTTTGTGGTCATGTTTTTTGTAACCAGTGCATTTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTACTACAAACTGCAAAACTCGACTAAGCATGTCTTCAGTGTTTTCCAAAATTGCTCTAAATAGTTCTTTTTCTGATCATGCTTGTGATGATTTGCCTGGTTACTCTGGTTGTGAAGTGGAGGAATCTGAGTTTTGTTCCCAGACTCAGCCATATGATTCTTCAAAAATTAAGGCTGCACTTGAGGTGTTGCACTCATTGTCTAAACCACAATGCTGTTCTTCCCAAAACAATTCTGTGCAGAGCATTTCTGAGGAAAGCAATGATGGCCTTGGTAGCTCATCTTGTGCTGACGCAATGAAATCCTCAAATGAAATTCCTGAGAGTCAAAATGAGTCTGAGGAGAGAAGCTCCAGTAATTCAGTTGGTGTGGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTACTTGAAGCATGTCTTAAGAATTCTTCAATCCAGTATAGAAGACTGGATGGAACAATGTCAGTAACTGCAAGAGATAAAGCTGTTAAAGATTTTAATACTCTCCCCGAGGTTTCAGTTATGATTATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTTGCTGCCTGCCATGTTCTCATGCTAGATCTTTGGTGGAATCCTACAACTGAAGATCAAGCAATAGATCGAGCACATCGAATTGGTCAGACTCGTCCTGTCACAGTTTTACGGTTAACTGTTAGAGATACAGTTGAAGATCGTATTTTAGCTCTGCAGCAAAAAAAGCGAAAAATGGTTGCATCTGCGTTTGGAGAGGATGGAACTGGTGGACGTCAAAGTCGCCTTACAGTGGATGATCTAAAATACTTGTTCATGATGTGATTAGAAATATATCCATACAGATATAATTTTAATTTTTTGGATAGGTGATTTTTTTCCTGGGAGCAGGCGTCAGGTTGTTTTTTTTTTGTGGCAGCAGGAGAGACAGGGTGCTGAATATTTTCTAACGTGGCCTCTGTTGACACATGACATGAAGATTATATGAATTATCTTTATAGTTAGAGAGATGATTCAATTGTTTACCTTGAAATTTTGGTTTAGTCATTAACATTTGTATAAGGTTGTAGAAAGTAGCATAGAGAAGCATAGAAAATTGTTGTGCTCATTGTAAATAATATAGATAGATAACATCTTTCCCCCTTTCCGGTCTTCCTACATCTGTTTCTTTTTTTCTAATCTTTAATGCAACATCAGAACATGCAAATTATATTTAACCTGGTGGTTTCGGTTTGTCATTTTAAAGTGATTCCATTCTATTTAAGTGCTCTTTTGAATAAATATGCTTGGAT 4978 0.3982 MMAEEGFDYSYLLDDDGDAADDDKLCIDLDTVMSVLDEDIDPSESSPEDFSIKNISPGELGIHNSFLLQNGNSVLECEHENLGPSSQTLSSPNALAGGCRDSSVVESDEICFTDTAGISNSKMPAYIADTRLPVPEANSSNIPVFGDNLNLTLWKCENDSQIKHVGYDAESEHASHGSIIANFDVNFGDYETYMKDIIGLSGKQENDSCTSFEMSFVDADRSSHVATSTDSSICQGSNVPNDFSDYYPSLNCCQGMDDRPVVANTSGYLSNGVYPHMWKNEEMKRNMKVAKMELFADTSSGMHSSINGGISFQDTQFMFADSKCASFFPSNVLFEEHASVHLSTCASYISTEGQSLNVKAERDKLILPYQNYVHSDDAEFNVGQQMKQLPGIFPAVGCQGNDIFNCEDRVTIAMTEKAKYYQDSIDGAAYNFSGNIGNLNLKAFDKSLYNVQTSIACGKQYNCVISEGEGNTFERRSIDSHPSKGSIVRSNIEDDSDVCIIEDIGHPAPISRSAEVGNSLDRGGYTHSYMVGGMRTKSRDEQYILRVALQVDTFSLEVLSSVADLSQPKSEVSPPDGLLAVPLLRHQVALLVQSLNYSDVVSPVKMDLCGTRSSLLHAICAGWLKSKFPILTLSHLILAALAIQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPVLNKCNNALKSELETLNLDADDDHLPENGVMKNESNTCQDMSSRNPNKNMGLLVHAKGRPSAGTLIVCPTSVLRQWADELHNKVTCKANLSVLVYHGSNRTKDPYDLAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGTYDDDHAVSSKKRKCPPSSKSGKKGLDSAMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPISRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELKKVEFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEKRLSLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPTTNCKTRLSMSSVFSKIALNSSFSDHACDDLPGYSGCEVEESEFCSQTQPYDSSKIKAALEVLHSLSKPQCCSSQNNSVQSISEESNDGLGSSSCADAMKSSNEIPESQNESEERSSSNSVGVGEKAIVFSQWTRMLDLLEACLKNSSIQYRRLDGTMSVTARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01934 1393 CDD DEXDc_SHPRH-like 644 962 - -
Pste2g01934 1393 SMART ultradead3 636 939 IPR014001 -
Pste2g01934 1393 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 551 1392 - -
Pste2g01934 1393 SUPERFAMILY RING/U-box 1075 1128 - -
Pste2g01934 1393 Gene3D - 852 963 IPR038718 -
Pste2g01934 1393 Gene3D - 732 844 IPR038718 -
Pste2g01934 1393 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 655 924 IPR014001 -
Pste2g01934 1393 Pfam Helicase conserved C-terminal domain 1236 1335 IPR001650 -
Pste2g01934 1393 MobiDBLite consensus disorder prediction 816 838 - -
Pste2g01934 1393 CDD SF2_C_SNF 1238 1345 - -
Pste2g01934 1393 Gene3D - 639 701 IPR038718 -
Pste2g01934 1393 MobiDBLite consensus disorder prediction 816 852 - -
Pste2g01934 1393 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1218 1388 IPR001650 -
Pste2g01934 1393 ProSiteProfiles Zinc finger RING-type profile. 1078 1117 IPR001841 -
Pste2g01934 1393 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 734 821 - -
Pste2g01934 1393 Pfam SNF2-related domain 661 1039 IPR000330 GO:0005524|GO:0140658
Pste2g01934 1393 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 844 974 - -
Pste2g01934 1393 SMART ring_2 1078 1116 IPR001841 -
Pste2g01934 1393 SMART helicmild6 1252 1335 IPR001650 -
Pste2g01934 1393 Gene3D - 977 1392 IPR027417 -
Pste2g01934 1393 ProSitePatterns Zinc finger RING-type signature. 1093 1102 IPR017907 -
Pste2g01934 1393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1071 1129 IPR013083 -
Pste2g01934 1393 MobiDBLite consensus disorder prediction 1196 1233 - -
Pste2g01934 1393 Pfam Zinc finger, C3HC4 type (RING finger) 1078 1115 IPR018957 GO:0046872
Pste2g01934 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1392 IPR027417 -
Pste2g01934 1393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 962 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01934 Pste-Chr2 19610988 19620783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01934 465 1392 RAD5 or RAD16-like Gene Family AT1G61140 55.222 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste2g01934 SNF2_N 2.4e-68 CL0023