Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01876 ATGGGGAGAGCACCTTGTTGTGACAAGAATGGCCTCAAGAAAGGGCCATGGACAACCGAGGAGGACCAGAAACTCGTTGATTACATTCAGGAACATGGGTATGGCAATTGGAGAACACTCCCAAAGAATGCTGGGTTGCAAAGATGTGGAAAGAGTTGCCGTCTCCGTTGGACGAACTATCTCCGACCAGATATAAAGCGAGGTCGCTTTTCATCTGAAGAGGAAGAAACAATCATTCAGCTACATAGCATTCTTGGCAACAAGTGGTCTGCTATTGCATCACGCTTACCAGGAAGGACAGACAATGAAATAAAGAACTACTGGAACACCCACATTAGAAAAAGGCTTTTGAGGATGGGAATTGACCCTGTTACACACAGTCCTCGGCTTGATCTTTTGGACATATCTTCCCTTCTAAACGCATCTTTCTATGCTTCATCTCAAATGCCCCTTGGCATGCAGCAGCCTTTGATGAACCCTGACCTTTTAAGGTTGGCTTCCTCACACCAACACAAAGGTCAAGATCCACACTTTGTTCAAGTTCATGATCCATGCAGCACCCCTTGTGTTTCGTGTCCTCTAACTCAACAACAGTTGGTTGAACTCCATAACGTGGACCCTTATACTTCATCAACATCAACTTTCACAGACTTCAGTTACCAACAGCATTCCCATGATGATCAGATAACTGTTTGGCACAAAGATGGGATTTCCTTAAGCACCTCAACAGATGAATATATCCCTCAGTTATCAAGCTATAATTATTCTAGTTTTGATACCCAGCATCTCGTGTATCCGTACCAACCTACAACTTTCCATTCTAATAACAGCAATCAGAATTTTAGCCTCGCTTCGGTTCTATCCACACCTTCGTCAAGCCCCACACCGTTGAATTCCAACTCCACCATAATCAACGGGAGCATCACAGAAGATGAGAAAGATCAAAGCTATGACAGTAGTAGCATGTTGACATTTGAAATCCCAGACATTTTTTATATGAATGAGTTCATGTAA 1014 0.432 MGRAPCCDKNGLKKGPWTTEEDQKLVDYIQEHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSSEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHSPRLDLLDISSLLNASFYASSQMPLGMQQPLMNPDLLRLASSHQHKGQDPHFVQVHDPCSTPCVSCPLTQQQLVELHNVDPYTSSTSTFTDFSYQQHSHDDQITVWHKDGISLSTSTDEYIPQLSSYNYSSFDTQHLVYPYQPTTFHSNNSNQNFSLASVLSTPSSSPTPLNSNSTIINGSITEDEKDQSYDSSSMLTFEIPDIFYMNEFM 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01876 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pste2g01876 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pste2g01876 337 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pste2g01876 337 CDD SANT 69 112 IPR001005 -
Pste2g01876 337 CDD SANT 16 61 IPR001005 -
Pste2g01876 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pste2g01876 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pste2g01876 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pste2g01876 337 FunFam Transcription factor MYB39 69 130 - -
Pste2g01876 337 FunFam MYB-related transcription factor 13 66 - -
Pste2g01876 337 SMART sant 13 63 IPR001005 -
Pste2g01876 337 SMART sant 66 114 IPR001005 -
Pste2g01876 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pste2g01876 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 270 - -
Pste2g01876 337 Gene3D - 69 116 - -
Pste2g01876 337 MobiDBLite consensus disorder prediction 290 310 - -
Pste2g01876 337 MobiDBLite consensus disorder prediction 290 315 - -
Pste2g01876 337 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01876 Pste-Chr2 19139760 19140951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01876 1 337 MYB Transcription Factor Family AT4G21440 52.459 1.36e-108 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste2g01876 Myb_DNA-binding 9.8e-16 CL0123