LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01859	GCTGTTTTATGGTGCACAAATTCTCTTAAACAAAAAGCTATTCTTGAAGATCATTCATCCTTGATCACTGATGTCCGTTTCAGTCCAAACATGCCTCGTCTTGCAACATCTTCATTTGATCAAACGGTCAGGGTTTGGCATGTTGACAATTCTGTGTATTCACTTCGTACCTTTGTCGGACATTCTGTACCTGTTTTGTCAGTAGATTTTCATCCAAACATAAGTGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATACGATATTGGATCATTAAAAATGGCAGTGGTGCTAGATTCTCCAAGGGTGGCAACAACTTGATAAGATTTCAACCTCGTCTAGGGAGGTACCTAGCCGCAGCTGCAGGGAACAAGGTGTCTATATTCGATGTGGAGACACAACTATGTAGATATTCATTAAAGGGACATGCAAAGATGGTATTTGATGTGTGTTGGGACCCTTATGGGCAATTGCTAGCATCTGTGAGTGCGGATTCTGTCAGGGTTTGGACTTTTGAATCCGGGAATGAAGGGAAATGTGTTCATCAACTTAGCCGAAATGACAATGAGTTTCATGCATGTGTTTTTCACCCTATGTACCCTTCATTGCTATCATTGGAGCTGTGGAACATGATTGAGAACAAGACAATGACCATTCTTGCTCATGACCATCTTATCACTGGCTTGGCTGTTTCAACTGTAAATCGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTCTGG	750	0.42	AVLWCTNSLKQKAILEDHSSLITDVRFSPNMPRLATSSFDQTVRVWHVDNSVYSLRTFVGHSVPVLSVDFHPNISDLICSCDGDGEIRYWIIKNGSGARFSKGGNNLIRFQPRLGRYLAAAAGNKVSIFDVETQLCRYSLKGHAKMVFDVCWDPYGQLLASVSADSVRVWTFESGNEGKCVHQLSRNDNEFHACVFHPMYPSLLSLELWNMIENKTMTILAHDHLITGLAVSTVNRLVASASHDKFIKLW	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01859	250	SUPERFAMILY	WD40 repeat-like	2	250	IPR036322	GO:0005515
	Pste2g01859	250	Gene3D	-	110	205	IPR015943	GO:0005515
	Pste2g01859	250	Gene3D	-	206	250	IPR015943	GO:0005515
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	15	50	-	-
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	58	90	-	-
	Pste2g01859	250	Pfam	WD domain, G-beta repeat	217	250	IPR001680	GO:0005515
	Pste2g01859	250	Pfam	WD domain, G-beta repeat	136	170	IPR001680	GO:0005515
	Pste2g01859	250	Pfam	WD domain, G-beta repeat	55	90	IPR001680	GO:0005515
	Pste2g01859	250	Pfam	WD domain, G-beta repeat	13	46	IPR001680	GO:0005515
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	219	250	-	-
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats profile.	58	100	IPR001680	GO:0005515
	Pste2g01859	250	SMART	WD40_4	51	91	IPR001680	GO:0005515
	Pste2g01859	250	SMART	WD40_4	133	171	IPR001680	GO:0005515
	Pste2g01859	250	SMART	WD40_4	8	47	IPR001680	GO:0005515
	Pste2g01859	250	SMART	WD40_4	212	250	IPR001680	GO:0005515
	Pste2g01859	250	PANTHER	TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8	1	250	IPR044716	GO:0003714
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats profile.	219	250	IPR001680	GO:0005515
	Pste2g01859	250	Gene3D	-	1	109	IPR015943	GO:0005515
	Pste2g01859	250	ProSiteProfiles	Trp-Asp (WD) repeats profile.	15	50	IPR001680	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01859	Pste-Chr2	18981928	18989733	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01859	52	250	Miscellaneous Gene Families	AT5G08390	22.857	1.22e-08	53.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g01859	2	18981928	18989733	Pste2g01859	2	18981928	18989733	ECH
	Pste8g00942	8	4891295	4902942	Pste2g01859	2	18981928	18989733	PCT