Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01856 TACTCTTTTGCTTCCTTCTCTTTCTATATCTCTCTTTTCCATTCTTGTCCTATGCTTCTGACGCACCTCTACCAACAAAATTCAGTTCTTTCACTACTTGCTTCTGCGCTTCACAACACCCAACTCATTCTTGACGCGCCTCTCTGCATATTCATTTCTCTACTCTTTCACCTTTCGCTTCCTCCACCATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGACTATCTCGTGAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCGTATATTGAGACACAATTAATAAAGGCAAGGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCACAACCCCAACAGTCACAACAGCAGCAGCAACAACACATGCAGATGCAACAGATCCTGTTGCAGAGAGCACAACAGCAGCAGCAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAACAACAACAGCCACAGCAACAGCAACAGCAGCCACAACCACAACAACAGCAAAGTAGGGATAGGACTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTGGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCCAATCATGCATCAATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCGGGACAAGTTTTGCATGCTTCTGCTGGGGGGATGTCTCCACAAGTTCAAGCACATTCTCAGCAATTACCAGGGACTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGGGGGTCCCGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGGAGCAATAATTTGACTTTGAAAGGGTGGCCACTCACAGTGAGTAATCTTTTTATTTTATTTGTTAGTTCTGGTGGATATATATATTGTCCTCCTAAATATATCATATTTATAATGTATCCTTCAAAATGGTGTGCTGCAGTCTTTGCAAAGAATGAGGGCTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTTATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGCTGACACCACAGCATCAGCAACAGCTTTTGCTGGCACAACAAAATTTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTAAGAATGCTATTGAATAATAGGAGTATGAGTCTAAATAAGGATGGTATTTCAAATCCTGTCGGTGATGTGGTTTCAAATGTCGGGTCCCCTCTTCAAGGTGGTGGGCCTCCTTTTCCTCGTGGAGATACCGATATACTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAGCAGCAACAACAGTCAAGTACCAATGCACAGCAGCAACAACTTCAGCAGCATGCCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTTGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAATTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAACCTGGATCTTCGTCAGGTCCAGCCAATAGTTCAGGAACAGCAAATACGACAGGTCCTTCACCAAGTTCAGCACCCTCAACTCCCTCCACTCATACGCCTGGAGATGTGATATCAATGCCTGCAATGCCTCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGGACTGATGGAACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTTTAGATGAAAATGTAGAGTCTTTTTTGTCCCATGAAGACACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCGGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTATACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTATGATTACTGATGTCCGATTCAGTCCAAGCATGCCCCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTTATCTGCTCGTGTGATGGTGATGGTGAGATACGATATTGGAGCATAAACAATGGCAATTGTGCTAGAGTCTCCAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCGGAGAACATTGTTTCTATATTTGATGTGGAGACACAAACATGTCGATATTCATTAAAGGGACACACTAAAACGGTGGATTCTGTGTGCTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGCGGAATGTGTTCATGACCTTAGCTGCAATGGCAACAAGTTTCATGCATGTGTTTTTCATCCAACGTACCCTTCATTGCTGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTGTTGCTTCCTTGGCTGTCTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTCATCAAGCTCTGGAAGTGAAGGTGAACCAATCATAATGACAATACATTAGGTCTTTTTCACATGCTACTACTTTATTTCCATTTTTTGCCCCTTCATTTTCTATGTATCTTTAGCTACTCATCCTGCTTATTTAAATATTTACTTGGATACTTTTCCCTTTAATGTTTGGATAGGATCCACTTACTCAGCAAATCATTGACTCTGTTTTTTTGTCTTCCTAATATTTGTATCTTTTGTACTTCAAAAGTTCAAACTCGCCA 3229 0.4398 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQQQQQQHMQMQQILLQRAQQQQQQQQQQQQQQQQQQQPQQQQQQPQPQQQQSRDRTHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHASAGGMSPQVQAHSQQLPGTTLDIKGEISPVLNPRAGGPEGSLMGMPGSNQGSNNLTLKGWPLTVSNLFILFVSSGGYIYCPPKYIIFIMYPSKWCAAVFAKNEGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLLLAQQNLASPSASEESRRLRMLLNNRSMSLNKDGISNPVGDVVSNVGSPLQGGGPPFPRGDTDILMKLKLAQLQQQQQQQQSSTNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQVSKNQMGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAMPHSGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHEDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGNCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQTCRYSLKGHTKTVDSVCWDPSGELLASVSEDSVRVWTLGSGSEAECVHDLSCNGNKFHACVFHPTYPSLLSLELWNMSENKTMTLSAHDGLVASLAVSTVNGLVASASHDKFIKLWK 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01856 932 SMART WD40_4 689 728 IPR001680 GO:0005515
Pste2g01856 932 SMART WD40_4 732 772 IPR001680 GO:0005515
Pste2g01856 932 SMART WD40_4 775 811 IPR001680 GO:0005515
Pste2g01856 932 SMART WD40_4 893 932 IPR001680 GO:0005515
Pste2g01856 932 SMART WD40_4 814 852 IPR001680 GO:0005515
Pste2g01856 932 SMART WD40_4 647 686 IPR001680 GO:0005515
Pste2g01856 932 MobiDBLite consensus disorder prediction 139 174 - -
Pste2g01856 932 Pfam LisH 10 36 IPR006594 GO:0005515
Pste2g01856 932 FunFam Transcriptional corepressor LEUNIG 633 787 - -
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 739 777 - -
Pste2g01856 932 Gene3D - 638 792 IPR015943 GO:0005515
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 739 781 IPR001680 GO:0005515
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 731 - -
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 731 IPR001680 GO:0005515
Pste2g01856 932 Gene3D - 793 886 IPR015943 GO:0005515
Pste2g01856 932 Coils Coil 448 468 - -
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 900 932 IPR001680 GO:0005515
Pste2g01856 932 Gene3D - 887 932 IPR015943 GO:0005515
Pste2g01856 932 SMART Lish 8 40 IPR006594 GO:0005515
Pste2g01856 932 MobiDBLite consensus disorder prediction 454 578 - -
Pste2g01856 932 Pfam WD domain, G-beta repeat 816 851 IPR001680 GO:0005515
Pste2g01856 932 Pfam WD domain, G-beta repeat 693 728 IPR001680 GO:0005515
Pste2g01856 932 Pfam WD domain, G-beta repeat 895 932 IPR001680 GO:0005515
Pste2g01856 932 Pfam WD domain, G-beta repeat 656 685 IPR001680 GO:0005515
Pste2g01856 932 Pfam WD domain, G-beta repeat 735 772 IPR001680 GO:0005515
Pste2g01856 932 CDD WD40 654 932 - -
Pste2g01856 932 Coils Coil 111 140 - -
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 900 932 - -
Pste2g01856 932 ProSitePatterns Trp-Asp (WD) repeats signature. 715 729 IPR019775 -
Pste2g01856 932 MobiDBLite consensus disorder prediction 454 489 - -
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 821 861 IPR001680 GO:0005515
Pste2g01856 932 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pste2g01856 932 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 695 IPR001680 GO:0005515
Pste2g01856 932 MobiDBLite consensus disorder prediction 500 560 - -
Pste2g01856 932 MobiDBLite consensus disorder prediction 408 440 - -
Pste2g01856 932 PANTHER TRANSCRIPTION ACTIVATOR MSS11 341 932 - -
Pste2g01856 932 SUPERFAMILY WD40 repeat-like 652 932 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01856 Pste-Chr2 18941697 18952252 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01856 733 931 Miscellaneous Gene Families AT5G08390 24.762 6.31e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pste2g01856 WD40 0.027 CL0186