Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01806 CTTTTGATGTACAAACCTATCATCAGAATTTCAATGTCTAGTTGGTGAAGAACACCGCCAAAGTCCACAAAACAACAATCGGTGGAGGTATTTATTTGTCAGCATGAGGGGAGCTCTAAAATATAAAATGGGCAAGTCTATTTCCCTTGGTTGAAATTTGAAAATAAGCTTCTATTGTTGTGTATAAGCCAATTCACTTCAACATCCCGTGAGCATCACAGAGCTACTGTGTTATACGTTGGAATACAGTGAGTTGGAGTATTCAAAAGGAATCACAAAAACGAAATATATAATCATCAGAAAGCTGTCACGTCTATTGATCGGACATTATATCTTCAGCTGTTTTTCATTACATAAAGAGTTTTCATATGGAGATTTCATCAATCAGAGGGTTACCTGAACTGGGGATAATAGAGGATCCTGATCTTCTCCATCAGTTGCAGTTAAGCTCTATTGATACAACAAGTTTAACAGGTGCTGCGTTTGGAGAGATTTTACAAAAGCACTCATTATATGATAATCCAAACATCACATGCATAGAAGCATCACCAACTGGAATTGAACGACCTTTAAAACAACTCAAAAACAATAACTGGAATCTCAACAAAAGTCAACAGACATTAGAGACACAATTTGGCTCATGCTCAAATCTTCTTTCATTTGTTAATTCGAATTACACAAGTGAATTGGGACTCGTGAAGCCTAAGGTGGAGATGATGTGTCCTAAAATTGATAACAAAACTCTTGCAGCGATGTTGATTTCTCAAGGAACATTGGGAAATGAAAACTATCTCTTCAAGGCTAAACATGAGTCGAAAAAGATTGAGACACGTCCTAAACTTTCTCAACCTCAAGACCACATAATGGCTGAAAGAAAGCGCCGAGAGAAGCTCAGCCAGCGGTTCATAGCTCTATCTGCTCTCGTTCCGGGTCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATCAAGTACTTGAAGCAAATGCAAGAGAAAGTGAGTGCTCTTGAGGAGGAACAGAAGAGGAAGAGAAGCGTGGAATCTGTGGTGATTGTTAAGAAATCTCAGCTATCTGATGATGCTGAAGACTCTTCTTCTTCAGACACTGGCTGTACATTTGATGAGGCACTACCTGAAATCGAAGCACGATTTTGTGAAAGAAATGTGCTCATAAGAGTACACTGTGAGAAGAATAAAGGAGTGATAGAGAAAACAATCAGCGAAATTGAGAAACACCATCTTAAAGTCATCAATACCAGTGCCTTGACATTTGGGAGTTTCATCCTTGATATAACCATTATTGCTCAGATGGAAGTGGAATTTTGCATGACAGTGAAGGATGTTGTGAGGAGTTTACGTTCAGCTTTTTCAAATTTTGTTTGAAGAAGTCTCATAGTTAATTACAACCACGTTATGCATTTTCCATCGTCCCAAATTAGAAGGTACGGTTTACGAAGAATACAAGTGCAACCAATTACTATATATAACATGCCATCAACTATTGTACGTCAAGTTTAAGTTCTTCAATAATAATTCTGTTTCGAAGGGTCGGTAATGTCTGTCATCTAGACCATGTTTGTTTGCTCTGAGGTTCATTTGCAGGAGGGTTTTTCT 1619 0.3817 MEISSIRGLPELGIIEDPDLLHQLQLSSIDTTSLTGAAFGEILQKHSLYDNPNITCIEASPTGIERPLKQLKNNNWNLNKSQQTLETQFGSCSNLLSFVNSNYTSELGLVKPKVEMMCPKIDNKTLAAMLISQGTLGNENYLFKAKHESKKIETRPKLSQPQDHIMAERKRREKLSQRFIALSALVPGLKKMDKASVLGEAIKYLKQMQEKVSALEEEQKRKRSVESVVIVKKSQLSDDAEDSSSSDTGCTFDEALPEIEARFCERNVLIRVHCEKNKGVIEKTISEIEKHHLKVINTSALTFGSFILDITIIAQMEVEFCMTVKDVVRSLRSAFSNFV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01806 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 223 IPR036638 GO:0046983
Pste2g01806 339 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983
Pste2g01806 339 PANTHER BHLH TRANSCRIPTION FACTOR 62 336 - -
Pste2g01806 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Pste2g01806 339 SMART finulus 165 214 IPR011598 GO:0046983
Pste2g01806 339 Coils Coil 198 225 - -
Pste2g01806 339 Coils Coil 68 88 - -
Pste2g01806 339 CDD bHLH_AtNAI1_like 162 234 - -
Pste2g01806 339 Gene3D - 158 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01806 Pste-Chr2 18469945 18474068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01806 159 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 60.656 2.16e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g01806 HLH 2.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01806 2 18469945 18474068 Pste2g01806 2 18469945 18474068 ECH
Pste3g03521 3 27682965 27685380 Pste2g01806 2 18469945 18474068 PCT