Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01755 CATGCACCAAATACTTGAAAGGCGTAATCGGCATTCAGGGATCCAAGATAACCCATCTATTGGGCAACAGTTGAATGGGAAAGACTTGGGAGGATTGACAATACAAGAATTGCAGAAACTGGAGGAACTACTTCAAGGACGTTGGACCACTATTTCGAAAATAAAGGAAGCCGAACTTACGGAAGAGAACCAGAAATTGAAACAAAGCTTCGTACGAAAACAAAGGCAATCATACGAGTCAATTACCCGCAGTTCGTCTGATTTACCTCCTGACTATGGTAGTTCTGACACATCTCTCAAGTTGGGAGGAATAGAGGACTATGGTGAGAAGTGGACGCATTTAGTCGCATTTCTGTCTCTCAGACAGACAGTTGAAAAATATGGGATAAGCATGTCTGGGTTGTTTGTTTTGGGTATGTATTTACTTGTTTTTATCCTTTACATGATTCTTGTCTTGTCTTGCACCGACCCAGGGTTGCTTTTCCTTTTCCTTTCTCCATCGCCTTCCATCTTAATTAACAGTAAGTTAGGGGTTAGGAAAATGGTGAGAAAGAAGATACCCATAAAGAAGATCGACGACAGGAAAAGTGGTCTTTTCAAGAAGGCACGGGAGCTCTCTCTTCTTTGTGATGCTGAGATAGCACTCATTGTCTTTTCACCTGCTGGCAAGCTCTTCGACTATGCTAGTTCAAGGTACGTTTTTTCCTCTTCCCTCCTCAAATTCACCTCTCACACTACTTATTTTGGCTGC 751 0.4234 MHQILERRNRHSGIQDNPSIGQQLNGKDLGGLTIQELQKLEELLQGRWTTISKIKEAELTEENQKLKQSFVRKQRQSYESITRSSSDLPPDYGSSDTSLKLGGIEDYGEKWTHLVAFLSLRQTVEKYGISMSGLFVLGMYLLVFILYMILVLSCTDPGLLFLFLSPSPSILINSKLGVRKMVRKKIPIKKIDDRKSGLFKKARELSLLCDAEIALIVFSPAGKLFDYASSRYVFSSSLLKFTSHTTYFGC 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01755 250 ProSiteProfiles MADS-box domain profile. 171 231 IPR002100 GO:0003677|GO:0046983
Pste2g01755 250 SUPERFAMILY SRF-like 181 234 IPR036879 GO:0003677|GO:0046983
Pste2g01755 250 SMART madsneu2 181 230 IPR002100 GO:0003677|GO:0046983
Pste2g01755 250 MobiDBLite consensus disorder prediction 1 22 - -
Pste2g01755 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 183 231 - -
Pste2g01755 250 PRINTS MADS domain signature 208 229 IPR002100 GO:0003677|GO:0046983
Pste2g01755 250 PRINTS MADS domain signature 193 208 IPR002100 GO:0003677|GO:0046983
Pste2g01755 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 194 227 IPR002100 GO:0003677|GO:0046983
Pste2g01755 250 Coils Coil 56 76 - -
Pste2g01755 250 Gene3D - 179 246 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01755 Pste-Chr2 18040450 18045689 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01755 157 231 MADS-box Gene Family AT5G51870 48.235 6.02e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste2g01755 SRF-TF 2.2e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste3g03419 3 26924678 26932232 Pste2g01755 2 18040450 18045689 PCT