Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01754 ATGCAACTCACACTATGGACATATAATGCTGCTTCTTTCATTCATACCTTGTTACATTACAATCATTACATTTACACCCTCATTTATTTATCGTTGCGGTGCAGGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCTGCTGCAAGGGCATATGACCAAGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACCAATTTCCCAACCTCAAAGAACCAAGCTGAAGCAGACGCATCCTCCCCTTCTGCTGGGTCTCATGACAACACTTTCTTATCTCCCAAAGCTCTCTCAGAACTCCTCAGCTCAAAGCTCAGAAAGTACTGCAAAGATCCTGCCCCTTCCCTCACTTGTCTCAGGCTAGATGCTGACAACTCCCACATTGGAGTCTGGCAAAAAGGGGCAGGACCACATTCTGGCTCCAACTGGGTCATGAGGGTAGAGCTTGGAAACAAACAGACCCATTCCCATGCCCAGTCAACGGGGTCACCACACACCGCTAATGATGCTGCTGTAAACAATGAAGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAGAGTTGCTTTGCAGATGATTGAAGAGCTGCTCAATTGGAACTAG 612 0.4641 MQLTLWTYNAASFIHTLLHYNHYIYTLIYLSLRCRKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEADASSPSAGSHDNTFLSPKALSELLSSKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGNKQTHSHAQSTGSPHTANDAAVNNEVEEEEEEEEEEDRVALQMIEELLNWN 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01754 203 SUPERFAMILY DNA-binding domain 34 73 IPR016177 GO:0003677
Pste2g01754 203 MobiDBLite consensus disorder prediction 154 190 - -
Pste2g01754 203 Gene3D AP2/ERF domain 19 73 IPR036955 GO:0003700|GO:0006355
Pste2g01754 203 Coils Coil 169 198 - -
Pste2g01754 203 Pfam AP2 domain 34 63 IPR001471 GO:0003700|GO:0006355
Pste2g01754 203 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 174 - -
Pste2g01754 203 MobiDBLite consensus disorder prediction 154 172 - -
Pste2g01754 203 ProSiteProfiles AP2/ERF domain profile. 7 71 IPR001471 GO:0003700|GO:0006355
Pste2g01754 203 SMART rav1_2 18 77 IPR001471 GO:0003700|GO:0006355
Pste2g01754 203 MobiDBLite consensus disorder prediction 175 190 - -
Pste2g01754 203 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01754 Pste-Chr2 18039113 18039724 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01754 36 202 AP2-EREBP Transcription Factor Family AT5G25390 56.287 1.70e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste2g01754 AP2 8e-07 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01754 2 18039113 18039724 Pste2g01754 2 18039113 18039724 ECH
Pste6g02960 6 17400308 17402605 Pste2g01754 2 18039113 18039724 ECH
Pste2g00125 2 498322 501716 Pste2g01754 2 18039113 18039724 ECH