LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01753	AGACTAGTGATAGATATTTCTTTCTGGGAATCATATATCAGAGTTAGCACCCTTTAGGGGTAAGCCACCAACATCGATCCTTCGCTGTTACCTGCAACCTATTAACCTATTCAGGAATCATTCTATTCATCCATTCCTGTGTAGAATATATGGCAAGAAAGAAGATACCGATCAAGAAGATAGACAACATAAACGCGAGGCAAGTAACATTCTCAAAGAGGAGGAAGGGTCTTTTCAAGAAGGCTCATGAGTTGTCCACTCTTTGCGATGCTGAGATTGCCCTCATAGTCTTTTCCGCTACTAGCAAGCTCTTTGAGTATGCTACTTCAAGGTTTTGCAATTAACTAGTTAGTTGATAGTTTTCTATACCTAAATAAAATATTGGCGTGCTTTACAACCTTCTCTGTTGAATTCTTTTGGAACGGATTCTCCACAACACGATCACGCAGCCTTGTTTTCTGTAGCACTTTTGGTTTTTTGGCTTAGATCCCTTCACCACTCTGTATCA	508	0.3996	MARKKIPIKKIDNINARQVTFSKRRKGLFKKAHELSTLCDAEIALIVFSATSKLFEYATSRFCN	64

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01753	64	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	60	-	-
	Pste2g01753	64	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	Gene3D	-	13	64	IPR036879	GO:0003677\|GO:0046983
	Pste2g01753	64	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Pste2g01753	64	SUPERFAMILY	SRF-like	1	61	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01753	Pste-Chr2	18023458	18027446	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01753	1	62	MADS-box Gene Family	AT4G24540	75.806	2.19e-29	101

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Pste2g01753		SRF-TF	7.9e-26	No_clan