Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01698 ATGGACCTGCATCGTGACACAAAGTTAACGCCATGTCCAGAAATCTGTGGTTCAATTTGTCATGGGAAGGACTTGGAGCCTTGTTCTAGAGATTGCAAAGTTTGCCTCAAGATCTGTCTAACCAATCCCCGATACCTTTATTATTATTATTCTCCTCCATCGCTTCCTCCTTTCCATTTGGATGATGATGCCACCGATCAAGGAAGCAACCACAAAATCTCCACCTACTTGTTCCTCGCTCTTGTTCTTCTAACTGCTGCTTTCTTTGTCGTTTCTTGTCGTGCCATGTATACCAGGTTTAGCTCAAGGAGGAGGGTATCGTCAAGGCACCACCACCACCACCATGATGACCACCACCATGATGAAGAACATGTCCCTGTGGTGGACCACCCCATTTGGTATATCCGCACCCTTGGCCTTCAACAATCAATCATCAATGCCATCACAGTTTGTAAGTACAAGAAAGGAGAGGGCTTGATTGAAGGAACCGACTGTGCTGTTTGCTTGAGTGAGTTTCTAGAGGATGACAATCTCAGGCTTTTGCCCAAATGTCATCATGCTTTTCATCTTCCCTGTATTGACACCTGGCTTAGGTCACATACCAATTGCCCCATGTGTCGGGCCCCAATTGTTGCTGACCTTCCTACTGCTACGCTGGACTCTAATTTTGTCCATTCTATTTCCTTGGAAAGTAGTGCTTCTCATTCTGAATTGTTGAATTATCATAGGGCAGAGGAAGGAGGCCAATTGCAAGTTGAAGATGGACTGAGGCCTTGTGAAACTGAAACCCCACTTGAAGAGGTGGCAAGCATTCGTCCTACAAGATCGGTTTCTCTGGATTCTTTTTCTGTTGCAAATATCAGTCTTGCTCTTGCAACAGTAGAATCTAATGGTAACTCAAAAAGAGTGCTAGAAGGCGTGGATGATGATTCTGCTGCTTCAAAAGGGTTTATTGGAAGCGATTTCCCAACAACTTCCAGCGGTAGCTCTTCTTTCAGGTTAACAAGATATCTGCAGGGTGTTCCTAGTTCTTCAATGAAAAGGTCACAGTCCTACAACGGCAAATACCTTCTATCCTGGTACGCCCGCAGTCAGAGGAAGCCAAATGCTCCTCTCACAAGCTTTTAA 1128 0.4512 MDLHRDTKLTPCPEICGSICHGKDLEPCSRDCKVCLKICLTNPRYLYYYYSPPSLPPFHLDDDATDQGSNHKISTYLFLALVLLTAAFFVVSCRAMYTRFSSRRRVSSRHHHHHHDDHHHDEEHVPVVDHPIWYIRTLGLQQSIINAITVCKYKKGEGLIEGTDCAVCLSEFLEDDNLRLLPKCHHAFHLPCIDTWLRSHTNCPMCRAPIVADLPTATLDSNFVHSISLESSASHSELLNYHRAEEGGQLQVEDGLRPCETETPLEEVASIRPTRSVSLDSFSVANISLALATVESNGNSKRVLEGVDDDSAASKGFIGSDFPTTSSGSSSFRLTRYLQGVPSSSMKRSQSYNGKYLLSWYARSQRKPNAPLTSF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01698 375 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Pste2g01698 375 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 66 212 IPR044675 -
Pste2g01698 375 SMART ring_2 165 206 IPR001841 -
Pste2g01698 375 Pfam Ring finger domain 164 207 IPR001841 -
Pste2g01698 375 SMART FANCL_C_2 161 214 - -
Pste2g01698 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 213 IPR013083 -
Pste2g01698 375 FunFam RING-H2 finger protein ATL54 140 213 - -
Pste2g01698 375 SUPERFAMILY RING/U-box 159 216 - -
Pste2g01698 375 CDD RING-H2_EL5-like 164 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01698 Pste-Chr2 17674502 17675629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01698 73 211 C3H Transcription Factor Family AT1G72220 53.191 1.23e-44 157