Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01697 AAGCAGAGGCAGCAGACATGGCTGAGTCAGAAACAAAGAAGAAGAAGGGGAAGGAAGAAGAAGAGGGGTTGATGATAAAGCCGCAGAGCTTCACGCCTCCAATAGACACATCCCAATGGCCAATACTGTTGAAAAACTACGACAGGCTGAACGTGAGAACAGGGCACTACACGCCGATCCCATCAGGCTACTCTCCGCTTAAACGGCCCCTCTCAGAGTACCTGAAATACGGTGTGCTGAACCTGGACAAGCCTGCGAACCCCTCCTCCCACGAGGTGGTGGCGTGGATCAAGCGCCTCCTCCGCGTTGAGAAAACGGGTCACTCCGGTACCCTGGATCCGAAGGTTACCGGCAACCTGATCGTTTGCATCGACCGTGCCACCCGGCTTGTGAAGTCCCAGCAGGGCGCCGGCAAAGAATACGTTTGCGTTGCCCGCCTCCACTCCTCCGTCCCCGACGTCTCCAAAGTCGCACGCGCCCTTGAAACCCTCACCGGCGCCGTCTTCCAGCGCCCCCCCTTGATCTCCGCCGTTAAGCGCCAGCTCCGTATTCGCACCATTTACGAAAGTAAGCTCCTTGAGTATGACCCTGATAGACATTTGGTTGTTTTCTGGATTTCTTGTGAGGCTGGCACCTATGTTAGGACTATGTGTGTTCATTTGGGGTTGCTTCTCGGTGTGGGTTCCCACATGCAGGAGCTTAGGCGTGTTCGCTCTGGCATTATGGGCGAGAAGGATAACATGGTCTCTATGCATGATGTCATGGATGCTCAGTGGGTCTATGATAATTATAGGGATGAGACTTATTTGCGCAGGGTTGTTATGCCCCTCGAGATTCTTTTGACTAGTTATAAGAGGCTCGTTGTTAAGGATTCTGCTGTCAATGCTATTTGCTATGGTGCCAAGTTCATGATTCCTGGCTTGCTTAGGTTTGAAAATGATATTGAGGTTGGTGAGGAGGTTGTGCTTATGACCACCAAGGGAGAGGCTATTGCTCTCGGCATTGCTGAGATGACTACTGCTGTTATGGCCACTTGTGATCATGGGATTGTCGCCAAGATCAAGAGGGTCGTCATGGATAGGGATACTTATCCCCGTAAATGGGGTCTGGGTCCCCGCGCTTCTATGAAAAAGAGGCTTATTAGTGAAGGGAAGCTCGATAAGCATGGCAAGCCTAATGACAAGACTCCCCAAGAGTGGCTTAGGAACCTGGTTTTGCCTACCGGTGGGGATAGTGTAATTGCTGGCATGGCTGCTGCACCCGAACCTCTCCATGGAGACGCCGAAGGGAAGAAGAGGAAGAAGCATGAAAGCACCGATAGCCCCATTGCTGTTCCTGCTAAGAAGGTGAAACTCAATCAAGTGGAAGAGGTTGAAAATCAAGAAAAGTTGAAGGTGAATAAAGTAGATGAAGAGTCTGTGGAGGTTGAGAAGAAAGAGAAGAAGAAAAAGAAGAAGGACAAGGACAAGGAGAACAACCAAGTGGCCTCTTCGGATGAGGAGAAACTGAAAAGAAGAAGAAAAAGCACAAGGATAAGGTTGAAGATGTCTGAGAAGAAAAAGAAGAAGAAGAAGGACAAAGAAGCTACTGCTGAGATTAGCAACGGAAAGGAGGATGACAGTAATGCTGATAAGAGTGAAAAGAAGAAGCATAAGAAAAAGAAAAACAAAGATGCTGAGGAAGAA 1685 0.4938 MAESETKKKKGKEEEEGLMIKPQSFTPPIDTSQWPILLKNYDRLNVRTGHYTPIPSGYSPLKRPLSEYLKYGVLNLDKPANPSSHEVVAWIKRLLRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVSKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNYRDETYLRRVVMPLEILLTSYKRLVVKDSAVNAICYGAKFMIPGLLRFENDIEVGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKRLISEGKLDKHGKPNDKTPQEWLRNLVLPTGGDSVIAGMAAAPEPLHGDAEGKKRKKHESTDSPIAVPAKKVKLNQVEEVENQEKLKVNKVDEESVEVEKKEKKKKKKDKDKENNQVASSDEEKLKRRRKSTRIRLKMSEKKKKKKKDKEATAEISNGKEDDSNADKSEKKKHKKKKNKDAEEE 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01697 556 MobiDBLite consensus disorder prediction 517 541 - -
Pste2g01697 556 Gene3D Pseudouridine synthase 64 270 - -
Pste2g01697 556 NCBIfam uncharacterized domain 2 274 350 IPR004521 GO:0003723
Pste2g01697 556 MobiDBLite consensus disorder prediction 453 556 - -
Pste2g01697 556 MobiDBLite consensus disorder prediction 501 516 - -
Pste2g01697 556 Pfam DKCLD (NUC011) domain 31 88 IPR012960 -
Pste2g01697 556 FunFam H/ACA ribonucleoprotein complex subunit CBF5 64 270 - -
Pste2g01697 556 SMART DKCLD_2 30 88 IPR012960 -
Pste2g01697 556 Coils Coil 463 495 - -
Pste2g01697 556 Pfam TruB family pseudouridylate synthase (N terminal domain) 92 208 IPR002501 GO:0006396
Pste2g01697 556 SUPERFAMILY Pseudouridine synthase 31 276 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pste2g01697 556 MobiDBLite consensus disorder prediction 453 500 - -
Pste2g01697 556 Pfam PUA domain 279 351 IPR002478 GO:0003723
Pste2g01697 556 Coils Coil 536 556 - -
Pste2g01697 556 SMART pua_5 279 353 IPR002478 GO:0003723
Pste2g01697 556 MobiDBLite consensus disorder prediction 416 437 - -
Pste2g01697 556 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 38 363 IPR004802 GO:0006396
Pste2g01697 556 CDD PseudoU_synth_hDyskerin 70 252 - -
Pste2g01697 556 SUPERFAMILY PUA domain-like 278 359 IPR015947 -
Pste2g01697 556 CDD PUA_Cbf5 277 351 - -
Pste2g01697 556 ProSiteProfiles PUA domain profile. 278 353 - -
Pste2g01697 556 Gene3D PUA domain 31 362 IPR036974 GO:0003723
Pste2g01697 556 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 6 484 IPR004802 GO:0006396
Pste2g01697 556 Pfam tRNA pseudouridylate synthase B C-terminal domain 209 275 IPR032819 -
Pste2g01697 556 MobiDBLite consensus disorder prediction 419 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01697 Pste-Chr2 17664883 17666587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01697 7 445 NAC Transcription Factor Family AT3G57150 83.333 0.0 741