Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01672 ATGGGGAAGCCCACAGGGAAGAAGAAGGGTGCGGTTGGTGCCAACACGCATGCTAAGCCCGGGAAGTCTTCGAAAGCTTTGGATGAAGACACGGCGATGTTCATCAACATGTCACAAGAGTTGAGGGAAGAAGGCAACAAGTTGTTTCAGAAGAAGGACAACGAAGGTGCCATGCTCAAGTATGAGAAGGCACTTAAGCTTCTCCCCAAAACCCACATAGATGTGGCGCACCTTCGTACCAACATGGCCTCGTGTTACATGCAATTGGGTCTTGGGGAGTACCCTCGAGCCATTCACGAATGCAATTTGGCGCTCCAAGTGTCGCCCAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACCTGCTATCGTGCGCTTAATCGCTTCGATTTCGCTCTCAGAGATGTTCAACTTGTTCTCGCCATGGAGCCTAATAATCTCTCCGCCTTGGAGTTTCGAGACAGTCTTGCAAAGTCAACTGATGAAAAGGGGGTCTCTGTTGATCATAAAGGGGTGGCTTTTGATGCTACCCTTCACCACTCTCCTGCTCCTTCTTCTCAAAAACTGAAGAAGAAAAGAGCTAAAAAAATTGAGAACAAGTTGGCTGTCATGGGAAAAGTCAGAGGTGCTGAGGACACGGTGGTTGTGAAGGAAAAAGTGAGAGGTGTTGAGGACATGCAGGACCAAGTCAGTGCTGTTAAGGATAAAAAGGTTGTTTCAAGAACTATTGGGCAACGGAAAAGGGTAGTGGAACCTGTGGAAGAAGAAAAATCTGTCTCTATCACAAGGAGTGTAAAGTTGGTGCTTGGAGAGGATATAAGGTGGGCAGAGTTACCCGTGAATTGTAGTTTGAAGTTGGTTAGGGATATAGCTAGGGATCGGTTTCCAGGTTTGAAGGGTGTTCTTCTCAAGTATAAGGATAAAGAGGGTGATTTGGTTACAATCACCACTACTGATGAACTAAGGTTAGCTGAAAAATCTGCTCCTGAGAATGCATCGTTTAGGATTTATATTACCGAGGTTAGTCTGGATCAAGAACCTTCTTATGATGGAACAACAACCAATGGGGATGAGGTGCAAAGGGTCAGTGGAAAACCGAGTAATGGTGTTGAGAATGTGGGTATGGAAAAAGGAAGAGATAAAGATATGGCACAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTGGGGTTTGAGTCTGATTCTTATCTGGATACTCACGAGTTTGCAATGAAGCTGTATGAAGAAGCAATGGAGGATTCGGTGGCAAGCAATGATGCTCGAGAACTTTTTGGAATTGCAGCGGATAAATTTCAAGAGATGGCTGCTTTGGCATTGTTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAACCAGGGTTTCTTTTCAGAGGACGGGACAAGTGAATCTTCGTTGGAGCATATAAAAGCTGCGTATGAATTGGCACAGAAGGAGTACAAGATTGCAGAAATGAAATATGAAGAAGCCTTGAAAATCAAACCCGACTTCTATGAAGGGTATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCAATGGCGTGCAAGAAGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTACTACTTTATAACAGAGCAGAGGACAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGATGGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTTTCAAAGATGTTTCTGATGATGAGGCTTCAAAGCAAGCTGCAAAGATGAGGTCTCAGATACATCTTTTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAATTGAAAAGTTTGAACTAGCTGGAACTTCTTCAACAGATATTGCTTTCATAGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGTTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCAGGGGTGGCAGTTTGCTGATCCTTCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTACATCTTGGAGCAATTTTAAGTTTTCTTCTTGAGTTTGAATTCTTAAGGGGCATGATTTCTTTTGTCATCATATTTTTGAAGCTGTCTTCATCCCATTCTAAGACAGGGACAGGGATTTTTGTTCTTCATACTGTTGTTCGGTGTTATCATTGGATTATTTTTTCTGATGCCAGTTTTGTACTAGTTGGGGTTACGGGCTAGAAGACCTGCCTATATATATATTGTTTCTATACTTGAAGGGATTTGCTACGGGTTTTCATTCTTTACAGGTATATTGGGCGATTTCATTTTTTTCAAGTGAAGGCTTGTGATCAATATTGTCAATTGTCGTTTGTACGTGACCAAGTGGTGTAACCATTTATGGATATCAAATAGCATACTCCAGT 2536 0.4306 MGKPTGKKKGAVGANTHAKPGKSSKALDEDTAMFINMSQELREEGNKLFQKKDNEGAMLKYEKALKLLPKTHIDVAHLRTNMASCYMQLGLGEYPRAIHECNLALQVSPRYSKALLKRATCYRALNRFDFALRDVQLVLAMEPNNLSALEFRDSLAKSTDEKGVSVDHKGVAFDATLHHSPAPSSQKLKKKRAKKIENKLAVMGKVRGAEDTVVVKEKVRGVEDMQDQVSAVKDKKVVSRTIGQRKRVVEPVEEEKSVSITRSVKLVLGEDIRWAELPVNCSLKLVRDIARDRFPGLKGVLLKYKDKEGDLVTITTTDELRLAEKSAPENASFRIYITEVSLDQEPSYDGTTTNGDEVQRVSGKPSNGVENVGMEKGRDKDMAQRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYEEAMEDSVASNDARELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGTSESSLEHIKAAYELAQKEYKIAEMKYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKKDLEAGFSDEVLLLYNRAEDSMEKGILMWEEMEEQRLNGISKSDKYKEQLEKMGLDSLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAIEKFELAGTSSTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFADPSFRLEPLFRRRVPKLHYILEQF 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01672 722 CDD PB1 269 337 - -
Pste2g01672 722 SUPERFAMILY CAD & PB1 domains 259 349 - -
Pste2g01672 722 MobiDBLite consensus disorder prediction 346 374 - -
Pste2g01672 722 MobiDBLite consensus disorder prediction 1 29 - -
Pste2g01672 722 MobiDBLite consensus disorder prediction 346 366 - -
Pste2g01672 722 Gene3D - 253 340 - -
Pste2g01672 722 Gene3D Tetratricopeptide repeat domain 35 162 IPR011990 GO:0005515
Pste2g01672 722 Coils Coil 481 508 - -
Pste2g01672 722 Pfam PB1 domain 261 338 IPR000270 GO:0005515
Pste2g01672 722 ProSiteProfiles PB1 domain profile. 261 340 IPR000270 GO:0005515
Pste2g01672 722 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Pste2g01672 722 ProSiteProfiles TPR repeat profile. 38 71 IPR019734 GO:0005515
Pste2g01672 722 PANTHER PROTEIN CLMP1 1 720 IPR044517 -
Pste2g01672 722 SUPERFAMILY TPR-like 38 528 IPR011990 GO:0005515
Pste2g01672 722 SMART PB1_new 261 340 IPR000270 GO:0005515
Pste2g01672 722 SMART tpr_5 76 111 IPR019734 GO:0005515
Pste2g01672 722 SMART tpr_5 479 512 IPR019734 GO:0005515
Pste2g01672 722 SMART tpr_5 112 145 IPR019734 GO:0005515
Pste2g01672 722 SMART tpr_5 38 71 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01672 Pste-Chr2 17443025 17447043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01672 22 145 Calmodulin-binding Proteins AT3G25230 28.571 3.08e-07 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00051 8 282161 286498 Pste2g01672 2 17443025 17447043 PCT