LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01645	ATTCCTTCTCCTTCCTCTCTCCTCCTCCATGGCTGAGGATAAGAGGATGAAGCTAGAGTTGTTTTGGATGTGTAATTTTTGGTCTCTTTTTTATTTTTTTTTTGCTTGGTTAACAAAAGGCAAGTTAGGGTTTGTTATTTTGGGGAAATTCCGGTTTCTTGCTAAAAGTCTGGTCTTTGAGCTAAACGTTCCTTCTGAAACCAAGCCATTTTGTCAGAAGGAGATGTCTACCTCTGTCATCAATGGCAATGATTCTCTCACTGGTCACATCATATCTACTACTATTGGAGGAAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGGGTTGTTGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCAATTAAAAAGGTTTTACAAGACAGACGATACAAGAATCGGGAACTACAGCTAATGCGTGTGATGGATCATCCTAATGTGATCGCTCTGAAGCACTGTTTCTTTTCCACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAGTATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTATAGCAATGCTAATCAAAGAATGCCCATCATCTACGTAAAGCTTTATATGTACCAGATTTTCAGGGGGTTGGCTTATATCCACACTGTTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACACCAAGTGAAGCTATGTGATTTTGGAAGTGCAAAAATTCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGATTCTATCGAGCACCAGAACTTATATTTGGTGCCACAGAGTATACTAGTTCAATTGACATTTGGTCTGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCTGCCATTATTCCCTGGTGAGAATGCAGTAGACCAGCTGGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTACGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACATCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTTTTGCAATATTCCCCAAGTCTCCGTTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTTCGGGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAACAGGAATTATCTGGAGCATCTCCCGAGCTTGTTAATAAGTTGATACCTGACCACGTGAAGCGGCAAATAGGGCTACAATTTGTTCATCTGGGAGGCTCGTGATGATAAAGCTTAGGGGGGCATAGTGTATACTAGCTGATACCATTATTTTTGTCTAAATACCATGTTCTGTGGCCTGACCAGTGTAGTTTCAAGCTGAACCATGACTGAGATTTGGAATGCTGGATGGCTGCAGTTGATCCCGTCAGTATATGTATTACCTTTTGATTCTCTTATGCTACTGCTGGATCTTTATTTCCCCAGGCAAATATATATAGCCTTGTTTATTGTAAACCCTACTTGTCATATAGTATATATACTTGACCTGCAATGGTCAGAGATCAGAACTCACAATGTTTTTGTATGGGGAAAACTAAAGCCTTGGCTGGAAGGAGAGAATGTCTAGAAGAGTTTTGATGGTGGCCTTGTTGGTTGGGTTTGGTTTCCTCATGTTAATATGTGCCTAATATGCAATGTTGCACTGGCACACCCCTTCGTTTCCTTGTCAAATGTAATGTGCTATCTATCTGTTTTCTTCAATGCCGCTTAATGTTCCTCATTTCACTTCTATTTCCTGGGTTTTTGAGACTTTTGGCACTAGCTGTGCTCCAATTATTTTTTATCTTGACATTTATATAATTT	1927	0.4079	MAEDKRMKLELFWMCNFWSLFYFFFAWLTKGKLGFVILGKFRFLAKSLVFELNVPSETKPFCQKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVIALKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKILVKGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGLPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHVKRQIGLQFVHLGGS	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01645	439	FunFam	Shaggy-related protein kinase kappa	179	426	-	-
	Pste2g01645	439	ProSiteProfiles	Protein kinase domain profile.	99	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g01645	439	Pfam	Protein kinase domain	99	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g01645	439	SMART	serkin_6	99	383	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste2g01645	439	Gene3D	Transferase(Phosphotransferase) domain 1	179	426	-	-
	Pste2g01645	439	Gene3D	Phosphorylase Kinase; domain 1	84	178	-	-
	Pste2g01645	439	CDD	STKc_GSK3	94	386	IPR039192	-
	Pste2g01645	439	PANTHER	GLYCOGEN SYNTHASE KINASE-3 ALPHA	63	428	-	-
	Pste2g01645	439	SUPERFAMILY	Protein kinase-like (PK-like)	98	408	IPR011009	-
	Pste2g01645	439	ProSitePatterns	Protein kinases ATP-binding region signature.	105	129	IPR017441	GO:0005524
	Pste2g01645	439	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	220	232	IPR008271	GO:0004672\|GO:0006468
	Pste2g01645	439	FunFam	Glycogen synthase kinase-3 beta	83	178	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01645	Pste-Chr2	17218345	17223497	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01645	103	421	MAP Kinase Gene Family	AT3G59790	35.629	2.63e-57	192

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_GSK	Pste2g01645		Pkinase	5.2e-64	CL0016