Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01600 ATGAGTAGCTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATTTATAACCTTGATGAGTCGGATGATGATGCTGATCTTTTGCCAAGGAAATCCGGGACAACACAGGAAAAGTTTGAGAGGATAGAGAGAAGTGATGCAAAAGAGAATTTGTGTCAAACCTGTGGAGAAAATGAAAATCTTGTGAGCTGTGAAACTTGCACATATGCTTATCATCCTCGGTGTTTACTTCCACCCCTTAAAGGTCCCCTTCCAGACAATTGGAGATGCCCAGAGTGTGTTAGCCCACTCAATGATATTGATAAGATATTGGATTGTGAGATGCGCCCCACTACAGCTAGTGACAACGATGCCACCAAATTAGGGTCAAAGCAAATTTTTGTCAAACAATACCTCGTGAAGGTACCAGAGAAAGAGTTTCTGAAAGCATTTAAGACTCACCCTCGCCTAAAGACCAAGGTGAACAACTTCCATCAAAAAATAGCGTCTGTCAATACTTCTGATGAAGACTTTGTAGCCATTCGACCTGAATGGACTACAGTTGATCGAATACTTGCTTGCAGGGGTGATGATGATGAGAGGGAATATCTTGTTAAGTGGAAGGAGCTTCCATATGATGAGTGCTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAGAGATTCAATAGATTTCGCTCTAGATCCAACAAATTTTCTTCAAATAAACAAAAGCACAGTGCTAAGGATGATGTTGAATTGAAGAGACAGCAGAAAGAATTTCAACATTTTGAACATAGCCCTGAGTTTCTTTCAGGTGGTACATTACATCCATATCAGCTGGAAGGCTTGAACTTCTTACGTTTCTCCTGGTCTAAGCAGACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAAAGTATTGCTTTCTTGGCATCCCTTTTTGGAGAGGGTGTCTCCCCCCATCTGGTGGTTGCTCCACTTTCAACTTTGCGTAACTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGAAGTGTTATTAGAGAATATGAATTTTACTTTCCAAAGAAACAGAAGAAGATCAAGAAAAAGAAATCTAGTTATATAATTAGTGAAAGCAAGCAAGATAGGATTAAGTTCGATGTTCTTTTGACATCATATGAGATGATCAATTTTGACACAGCATCACTAAAACCTATTAAATGGGAGTGCATGATAGTTGATGAAGGTCACCGCCTAAAAAATAAGGATTCAAAATTATTTTCTTCATTGAAGCAATATTCTAGTCGACATCGTGTTCTCTTGACAGGAACTCCTCTTCAGAACAACTTGGATGAACTCTTTATGCTCATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATCAGGAGGAACAGATCTCAAGGCTTCATAAAATGTTGGCCCCACATCTCCTGAGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCTCCTAAAAAGGAACTTATTCTACGTATTTCTCTTATCAATGTTGTTATGGAATTGCGTAAGCTATGTTGTCATCCTTACATGTTAGAAGGGGTTGAACCAGATATTGATGATGCAAAAGAAGCATACAAACAGCTGTTGGAATCATCGGGGAAGTTACAGTTGCTGGACAAGATGATGGTCAAGCTTAAAGAGCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCACATGCTGGATTTGCTTGAAGATTACTGTACTTACAAGAATTGGCAATATGAAAGGATTGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTTCGGATAGATCGATTCAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACAAGAGCTGGGGGACTGGGGATAAACCTTGCTACTGCTGACACAGTTATTATTTATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCTAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTAATTTATAGGCTTATAACACGAGGAACTATTGAAGAAAGGATGATGCAAATGACCAAGAAGAAAATGGTGTTAGAGCACCTAGTTGTAGGAAGGTTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGACATCATAAGATATGGCTCAAAGGAGTTATTTGCAGATGAGAATGACGAAGCAGGCAAATCTCGTCAAATCCATTATGATGCTGCTGCTATTGATAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAAGCTACTTTGGATGACGAAGATGAAGATGGATTTCTGAAGGCCTTTAAGGTTGCTAATTTTGAATATGTAGATGAGGCAGAGGCTGCAGCAGAGGAGGCAGCCCAAAAAAGAGCAATGGAGACACTGAACAGTTCCGAAAGAACACATTACTGGGAGGAGTTGTTAAAAGATAAGTATCAAGAGCATAAAGTTGAGGAGTTTAATGCCTTGGGCAAGGGGAAGCGGAACCGAAAGCTGATGGTTTCCGTGGAGGAGGATGACCTTGCTGGTCTCGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAACTTACAGACGGTGATTCAAATTCTGCTGGAACTACTACTACTAAAAGGCCTTATAAAAAGAAAGCACGTAATAGCACAGAGCCCCTTCCTCTGATGGAAGGTGAAGGAAAAGCATTTAGAGTCCTTGGTTTTAATCAAAATCAGAGGGCTGCATTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACATCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGGATCCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGAGTCCTCTACATTTACAGATGGTGTCCCAAAAGAAGGACTACGAATCCAAGATGTACTTGTTAGGATTGCAGTCCTGCTCTTGATAAGGGATAAGGTGAAGTTTGCGTCACAACATCCTCAAACTCCATTGTTTTCAGATGACATCTTATTACGCTATCCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTGATACTGCATGGGTATGGAAGGTGGCAAGCTATCGTTGATGACAAGGATCTGAAGATTCAGGAGCTCATCTGTCAGGAGTTGAATCTCCCCTTTATAAACTTACCAGTACCAGGACAAGTTGGCTCTCAGGCACAAAATGGTGCAAATTTAACAAATGCAGAAATACCCAATAGTCAATCCCGGGAAAATGGTGGAAGTGATATGCCAGCTGATGGCGCACAGGGTTCTGGTGATGCTAGGAACCAAGCACAGTTATATCAAGACTCCTCCATTTTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTATAAAAAAGAGGGTTCTTCTTTTGGAAAAAGGTTTGAATGCCGAGTACCAGAAAGAATACTTTGGTGATTCTAAAGCAAATGAAGTAACAAATGAAGAACTTAAAAGTGAACCCAAGGCTACTACTAATTTACCAAGTTATAAATCAGGGGAAACTGACACCCAAATAATTGATCAAATGCCGCAAGTAGAAACAATAGCTTCAGAAGAAATTTCGGCTGCTTGTGATAGTGATCCCAATCGATTGGAGTTAGTACGCCTTTACAATGAGATGTGCAAGGTAGTGGAAGAAAACCCCATGGATTTACTTCAAACTTCTTCAGCCAGAGAATCAACAGAGTTCAATGTAGTGAAGAATTTCCCTCCACTAGATACACTTTGCGAAGATATTAACAGAATTCTAACACCCACACAAGAACAACCTGTAGCAGAAATGCCAATATCGAATGTGGATAACAAATCAGAGGCTATGTCAGATGGTGAAAATTTAGGTACCAAATCACTGCCAATCCCTCAAGATGCTTGCAAACCTAAAGATTCAGCAGAAAATGAGAGTAAAGATATGGTAATAGAATCTGAACCTATAAAAGAAAGCTGCTCTAGCCTGGTAAAAGAAAAGAGTGAAACACAGACTCTTCCGGAGAAAGAGAAATGCAATACAGAAACTGATGAAATTATGACTGATGCTGACTGAGTAAAATGGAAACCCAGAGAAATCTGAAGGTAGTGTCGTTGTATTGGATGGTTAAACGCCACAGATATTTGTTGTACCTTGTAACCATATTAGTCTTGATCAACATTGTTTTAGCACATTAAAAGAAGTCAATTGAAAACAAAAAGGTCTATAGAATATGCGTTAGTAATTCAATCCCGCGCTCCTAACCCGATTAGAAATTCTTCATTTTCATGTATTGCTGCTAGACGTATTCATTTTTCGATGAATTAAAGAGTATGATCAATTGTATACTACACGGCACGTTACCCTTCATTCTATTTGAGAATGAGCAGAGAACTAAGGAAATATCCGTAAACCCCTTTGGTTGTTTTTTGTGACATTTTTGTTTGATCCCGTATTTCAGTATGG 4536 0.3962 MSSLVERLRVRSDRRPIYNLDESDDDADLLPRKSGTTQEKFERIERSDAKENLCQTCGENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTASDNDATKLGSKQIFVKQYLVKVPEKEFLKAFKTHPRLKTKVNNFHQKIASVNTSDEDFVAIRPEWTTVDRILACRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRFRSRSNKFSSNKQKHSAKDDVELKRQQKEFQHFEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGEGVSPHLVVAPLSTLRNWEREFATWAPQMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSSYIISESKQDRIKFDVLLTSYEMINFDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRISLINVVMELRKLCCHPYMLEGVEPDIDDAKEAYKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCTYKNWQYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDAAAIDRLLDRDQVGDEEATLDDEDEDGFLKAFKVANFEYVDEAEAAAEEAAQKRAMETLNSSERTHYWEELLKDKYQEHKVEEFNALGKGKRNRKLMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGDSNSAGTTTTKRPYKKKARNSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGSLFLSHIAEDITESSTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVKFASQHPQTPLFSDDILLRYPGLKGAKIWKEEHDLILHGYGRWQAIVDDKDLKIQELICQELNLPFINLPVPGQVGSQAQNGANLTNAEIPNSQSRENGGSDMPADGAQGSGDARNQAQLYQDSSILYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGDSKANEVTNEELKSEPKATTNLPSYKSGETDTQIIDQMPQVETIASEEISAACDSDPNRLELVRLYNEMCKVVEENPMDLLQTSSARESTEFNVVKNFPPLDTLCEDINRILTPTQEQPVAEMPISNVDNKSEAMSDGENLGTKSLPIPQDACKPKDSAENESKDMVIESEPIKESCSSLVKEKSETQTLPEKEKCNTETDEIMTDAD 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01600 1381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 105 IPR013083 -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 864 911 - -
Pste2g01600 1381 Gene3D - 169 230 - -
Pste2g01600 1381 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 473 IPR014001 -
Pste2g01600 1381 SMART PHD_3 53 96 IPR001965 -
Pste2g01600 1381 SMART chromo_7 179 233 IPR000953 -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 1303 1381 - -
Pste2g01600 1381 Pfam SNF2-related domain 295 535 IPR000330 GO:0005524|GO:0140658
Pste2g01600 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 722 IPR027417 -
Pste2g01600 1381 Pfam Chromo (CHRromatin Organisation MOdifier) domain 182 230 IPR023780 -
Pste2g01600 1381 CDD SF2_C_SNF 567 693 - -
Pste2g01600 1381 SUPERFAMILY FYVE/PHD zinc finger 42 98 IPR011011 -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 864 882 - -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 1328 1375 - -
Pste2g01600 1381 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 528 1362 - -
Pste2g01600 1381 ProSiteProfiles Chromo and chromo shadow domain profile. 181 243 IPR000953 -
Pste2g01600 1381 Gene3D - 241 532 IPR038718 -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 1100 1125 - -
Pste2g01600 1381 Coils Coil 798 818 - -
Pste2g01600 1381 SUPERFAMILY Chromo domain-like 166 231 IPR016197 -
Pste2g01600 1381 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Pste2g01600 1381 MobiDBLite consensus disorder prediction 1181 1201 - -
Pste2g01600 1381 MobiDBLite consensus disorder prediction 1187 1201 - -
Pste2g01600 1381 Gene3D - 533 769 IPR027417 -
Pste2g01600 1381 CDD CD2_tandem 179 230 - -
Pste2g01600 1381 Pfam CHD subfamily II, DUF1087 804 862 IPR009463 -
Pste2g01600 1381 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 733 IPR001650 -
Pste2g01600 1381 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Pste2g01600 1381 Pfam PHD-finger 54 96 IPR019787 -
Pste2g01600 1381 SMART helicmild6 598 682 IPR001650 -
Pste2g01600 1381 Pfam CHD subfamily II, SANT-like domain 893 1025 IPR009462 GO:0003677|GO:0006338
Pste2g01600 1381 SMART DUF1087_2 799 865 IPR009463 -
Pste2g01600 1381 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Pste2g01600 1381 SMART ultradead3 271 484 IPR014001 -
Pste2g01600 1381 Pfam Helicase conserved C-terminal domain 569 682 IPR001650 -
Pste2g01600 1381 SMART DUF1086_2 870 1028 IPR009462 GO:0003677|GO:0006338
Pste2g01600 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 508 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01600 Pste-Chr2 16845807 16865028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01600 561 733 RAD5 or RAD16-like Gene Family AT5G22750 32.948 1.85e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste2g01600 SNF2_N 3.6e-58 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00156 8 882551 886440 Pste2g01600 2 16845807 16865028 PCT