Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01588 CGTCCTCGAATTGTTGTGAACGGTGTTCGAAGGACAAGAACTTTTCACTATTTCTGGTGCCTATATTGCCAGAGAACTGTGAGGATACCCTTTACAAATAATGATATTGATGCTACTGTGTGTCCCTATTGCTTTCACCAACTGCGTTATGAGCTTGATATCTCAAGGCCAAGGCTTCTCATGAACATGCCTAATAACTTGGACCCTTCCCCACCCACTCAATTATTGCATAATTTGGCCCTCATTCTTGATCCACCTCTAAACAACAACCACCATTTCAACACAACCACACAATGGGAAACTGATCATCAAAATGAAGATGCCTCAGATCCTCAGGCTTGGATTACTCTCCAATTTCCTAGGCCTATCTCTCCACCACAAAACATTAATATGGCTCCCCAGACCCTTTTTGAGAATATACTATATGATGACTTCATTGATGGGGTGATTCAGAACAATAATAGACCAGGGCCACCTCCAGCAACATCTTCGGCCATTGCAGCGCTGCCAATGATCAAACTAACACAAGCCCATTTGGTAAGTGACCCCAATTGCCCAATTTGCAAAGATGAATTTGAGATTCATATGGAAACCAGAGAGTTGCCATGCAAGCACTTCTACCATTCTGACTGCATCATTCCTTGGTTGCGCATGCACAACACTTGCCCTGTATGCCGCTATGAACTACAAGCTGTACCAACTCCTAATGCTAATTATCGTTTCCAAAATTATGAAAATGACATGGGTTTTGGGTTTGAAGAATTCATAAGAACCTTTAGCTGGATTTGGAACCAACTGGCTTCGTTCAGGCCTCTCCGTTCAGTCCTAGATTGGACACGCTCCTGCTTTGATTTCCAACAAAATCATCTTCCTGGTCCTAGAGAATTATTCCACTTGTTTACTGTTAATCAGGTAAAAGGTGCAGAGCACCTCAATGCAAGGACACGGATGGATTTGATACAGAGGATCTCGAAGGCTACTTCTGGTTCATGTGCCCACAAGTTATGA 1008 0.4306 RPRIVVNGVRRTRTFHYFWCLYCQRTVRIPFTNNDIDATVCPYCFHQLRYELDISRPRLLMNMPNNLDPSPPTQLLHNLALILDPPLNNNHHFNTTTQWETDHQNEDASDPQAWITLQFPRPISPPQNINMAPQTLFENILYDDFIDGVIQNNNRPGPPPATSSAIAALPMIKLTQAHLVSDPNCPICKDEFEIHMETRELPCKHFYHSDCIIPWLRMHNTCPVCRYELQAVPTPNANYRFQNYENDMGFGFEEFIRTFSWIWNQLASFRPLRSVLDWTRSCFDFQQNHLPGPRELFHLFTVNQVKGAEHLNARTRMDLIQRISKATSGSCAHKL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01588 335 SMART ring_2 185 225 IPR001841 -
Pste2g01588 335 SUPERFAMILY RING/U-box 166 232 - -
Pste2g01588 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Pste2g01588 335 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Pste2g01588 335 Pfam Ring finger domain 184 226 IPR001841 -
Pste2g01588 335 FunFam E3 ubiquitin-protein ligase RING1-like 149 232 - -
Pste2g01588 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 107 229 - -
Pste2g01588 335 CDD RING-H2_RNF126-like 184 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01588 Pste-Chr2 16791750 16793028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01588 1 286 C3H Transcription Factor Family AT1G68180 32.414 6.91e-41 141