Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pste2g01553 | GGGAGTGGTAGTGCGAATTGAGAATTGAGAATTGAGAATTGAGAATTGAGAATTGAGAATTGAGAACCAGAGAATGGAGGAGGAGAAAATAGTTGGATACGTTACCGCGTTCCTTAAGAAGAAAGGGTTCACGCAAACGGAGAAGATTTTCCAGGAAGAATTCCAACACAACAAGAGCTGTTCATCCCTGGAAGCGGACATTGGCAACCACCTCTTGGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTATAGCAAACTAAGAACATGGACTTATTCTTCGCTAGATTTGTACAAGGTAAGCTATCCTTTCCTCTTTTACTTTCTTTCCCCCCCCAATTTTTCTTACTTCACGCTTCCGCCTTCCCTTCCAGCACGAGCTGCTTCGCGTGCTTTATCCGCTCGCAACTTTTTCAATACTTTCCGTGAGGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTGCTCATCTCCAGGAAATGGAGTTCGCTCATTCCCTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCAATGAGCTTCTGTTGCAACATCTACACAGTACACAATCCACCACTATACTTGGTATTATCAACGAGCATATTAATTTTCAAGTTACCCCTGGACAACCTAGCTTAATTTCTGATGACCCGGAAGCTGTTACCCTTACTGGAAGTAGCCAGGAAGCAGCAAACCAGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAAAGGCTGGAGAAGTCTGGGGCTTTTCTTTCAGACTCTGAGAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAAAAAAGATCCAGTGAAGGAGGAAAGCAAGGTGCTTCAGCAAAAAAAGTAAAAAAGGACAAGGGTGGTAGTGCTACTGGAAAAAGTGCAAAACCTGAAGCTAACAATATACCTGCAGCTCCTCGAGTTAAGCCAGAACTCGCCTTACCCGTAATGCCAACTGAGGTGGAGCAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAATGTTGCATTGCCGTCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCTATATCCCATGATGGATCATTGATTGCTGGAGGGTTTTCTGACTCATCACTGAAGGTTTGGGATATGGCACAGCTTGGACAACAGCCTGCCAGTTCTCTTTTGCAGGGCGAGAATGACACCTCACAAAATGAACAATTATTGGGGCAAGGTGGTGGAAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTGTATGCAGCCTCTTTTAGTCCTGTTGGGGATTTTATCCTTTCATCTTCAGCAGATTCAACAATTCGATTATGGAGCACGAAACTTAATGCCAATCTTGTTTGTTACAAGGGCCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTGTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCTTTAAGAATAATGGCAGGGCACTTGTCCGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTACGACTGTGGGATGTGCAGAGTGGTGAGTGTGTCAGGGTTTTCGTTGGTCACAGGGGTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTGTATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCTCTGATTGGGCACACATCGTGTGTCTGGTCCCTTGGATTCAGTTCTGAAGGTTCTATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAACTCGAGCACCAAGGTTTCAAGAATTGAAGAAAATAGAGGTGGGAATGCTAACAGACTTCGATCGCTGAAAACTCTTCCAACCAAATCTACTCCAGTTTATTCATTGAGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGGGCTCTAGCAAAAAGTGGCTAACATATTTGAGTATGCCTACTAATAGATTAGATCAGATCAGAATGGTTGAAGTTGAATTTCTCGCCTTAAAACCCCACGAGCATCTACTTGTGTACTCCTTCTGGGTCCTATATGTAGGGCATCTTCCCGAGAATTGACAAATGTAGTTAATTTAGTGATATTAATATTTTAGTTTATTTGTATACTTTCTATAATTAATTTGAGACCTTATTTTCGTTGAATTGTTTATCTATTTCCACTTTAGTAATG | 2347 | 0.4299 | MEEEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSCSSLEADIGNHLLAFSQLETGPARFHDGYSKLRTWTYSSLDLYKVSYPFLFYFLSPPNFSYFTLPPSLPARAASRALSARNFFNTFREDHEMMHLRDLQKLEGVLSPAHLQEMEFAHSLRQSKFNIKICEYSNELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKSGAFLSDSEKGEGEAKEGENDETKKRSSEGGKQGASAKKVKKDKGGSATGKSAKPEANNIPAAPRVKPELALPVMPTEVEQSILEDLRNRVQLSNVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAQLGQQPASSLLQGENDTSQNEQLLGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASCSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRCMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLGFSSEGSILASGSADCTVKLWDVNSSTKVSRIEENRGGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG | 674 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pste2g01553 | 674 | Pfam | WD40 associated region in TFIID subunit, NTD2 domain | 55 | 191 | IPR007582 | - | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 461 | 495 | - | - | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 461 | 502 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 419 | 451 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 368 | 382 | IPR019775 | - | |
| Pste2g01553 | 674 | Gene3D | TFIID subunit TAF5, NTD2 domain | 39 | 196 | IPR037264 | - | |
| Pste2g01553 | 674 | PRINTS | G protein beta WD-40 repeat signature | 606 | 620 | IPR020472 | - | |
| Pste2g01553 | 674 | PRINTS | G protein beta WD-40 repeat signature | 522 | 536 | IPR020472 | - | |
| Pste2g01553 | 674 | PRINTS | G protein beta WD-40 repeat signature | 438 | 452 | IPR020472 | - | |
| Pste2g01553 | 674 | PANTHER | TRANSCRIPTION INITIATION FACTOR TFIID | 2 | 669 | - | - | |
| Pste2g01553 | 674 | SMART | WD40_4 | 342 | 381 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SMART | WD40_4 | 412 | 451 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SMART | WD40_4 | 454 | 493 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SMART | WD40_4 | 496 | 535 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SMART | WD40_4 | 538 | 577 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SMART | WD40_4 | 580 | 619 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | SUPERFAMILY | Taf5 N-terminal domain-like | 45 | 196 | IPR037264 | - | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 498 | 535 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 458 | 493 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 581 | 619 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 351 | 381 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 539 | 577 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Pfam | WD domain, G-beta repeat | 416 | 451 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | Gene3D | - | 500 | 578 | IPR015943 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 503 | 540 | - | - | |
| Pste2g01553 | 674 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 522 | 536 | IPR019775 | - | |
| Pste2g01553 | 674 | Gene3D | - | 217 | 499 | IPR015943 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 587 | 628 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 587 | 622 | - | - | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 545 | 586 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 545 | 582 | - | - | |
| Pste2g01553 | 674 | ProSiteProfiles | LIS1 homology (LisH) motif profile. | 2 | 34 | IPR006594 | GO:0005515 | |
| Pste2g01553 | 674 | CDD | TAF5_NTD2 | 57 | 197 | IPR007582 | - | |
| Pste2g01553 | 674 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 606 | 620 | IPR019775 | - | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 419 | 451 | - | - | |
| Pste2g01553 | 674 | Gene3D | - | 579 | 673 | IPR015943 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 349 | 382 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 503 | 544 | IPR001680 | GO:0005515 | |
| Pste2g01553 | 674 | MobiDBLite | consensus disorder prediction | 245 | 292 | - | - | |
| Pste2g01553 | 674 | MobiDBLite | consensus disorder prediction | 245 | 307 | - | - | |
| Pste2g01553 | 674 | SUPERFAMILY | WD40 repeat-like | 343 | 669 | IPR036322 | GO:0005515 | |
| Pste2g01553 | 674 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 564 | 578 | IPR019775 | - | |
| Pste2g01553 | 674 | CDD | WD40 | 350 | 670 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pste2g01553 | 486 | 673 | Miscellaneous Gene Families | AT5G08390 | 27.128 | 8.34e-20 | 92.4 |