Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01544 GATTAAATGAAAAATCCCGCCAATGACTTTGTGTGGCACTCCCACTTCTCTCTGTATTTTCTCCGCAAACAGCAATCGCTTTCTTAGGGTTTTCTTTTTAATTGCTTCTCAAGATTGCGATATCCGTTGCATTTCTCTTCCAGTTGCCGATGCCCAAATTTAGATAAGTTATGTCCACAGCTTTTCTCATTATTATTATTGCATCGTATCTCTGTCCTTACATTTCAATTGAATTCTGAATCTGCAGGGAATGTGGTTTGTGTGCTACCGAAATGAGACAAGGGGAAGCCAATTCGGCCCTGGGTGTTAAAGGCGTTGACAAATTCAATTGGTTGCATCATGCCAATGCTCATGAGAATTTCTCCTCTCAATCCAAATTTTTGAGCTCTCATTTTCTGTTCTCTGACCCGTCTAAGAAACCAATCTCTGCGACTGCAGGGTTTATATTACGACGAAGTGAAACTATTCAAGGTTCACAGAGAGTACAACTTGAGAAGGCTTGGACTGCTCTTTCAAATCTTCAAAGTTCCAGTAGGAGCTATGTTCAACCAGGAAAAAGTGTGGAGGTTACTCCTCAACCTCATGAAGACAGGAAAACAACTTCCTTCTATGGAGGCTATGAGAATGTCAACCGTACGTGTCCTGATGTCACCGTGACTCCAATTATTATTAATCATACTACTCAGGGTTTGGATGGCTCAGTTAATAATCATACTAAATACACAGACCAACTTAATGAGTCTTCCAGCTGCATGGTTGGAGATATTGATGATGATATACTTGAGAACATTGATGTTGACCAAATTGTGGAGAAATACCAGTCAACTTGCACTCCCAAACCATCAATACCCAGTCCCAAGCTTCCTCCTATAACACCAACTGCAGATAAGGATAATTCTGCTGGACAAGAGGACAATGTTTTGCCACCGGAGCTGTGTTTAGATTGCATCCATGGTTACAAGTTAGGGCTTTGCCCAGAAGCAGCAAGTCATTTGCAGGAGTTGAAGGATAATCTAATTGCAATCTCCAACGAACTGCTTGACAATGGAGAAAACCTCAATGCTACACAGATAGCAAAACTACGCCAGGATAGGTCACATCTGAATAAGCAAATTCAGCAGCTTGAAAGATATATTCAGTCTGGAAATCTCAATGAGGAAAGGCAAAAGTCACATTTTTCAGCATCCACTGCACCACCTACATCTTTTGTGTATGAAACACCTCGGCAAACTGTCCTTTGTAATGGATCTAAGGGATATGATTCCCAGGCTTATATGGGTAATGGGTCATATGTGTCATCGTTCCAGTCTCTTCCATCTTTTTCTGTAGATAAGTATAGCATGTCATTAGGTCCAGTGGAGAGGGAAGTGTTCGTCCCAAAGATTATTGAAGTTAATTACATTGAAGGTTCGGGAGACAAACGCTGGAGCAGCCGTGATTTTCCTTGGACAAAAGAGTTAGAGGTTAATAACAAAAAAGTATTTGGAAATCACTCATTTCGCCCGAATCAAAGAGAGATAATTAATGCCACAATAAGTGGATGTGATGTTTTTGTTCTGATGCCCACTGGTGGTGGAAAGAGTCTGACCTATCAGTTACCAGCACTTATTCGTCGCGGTATAACATTAGTAATTTCTCCCCTTGTGTCTCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCAGCTGCGTACTTAAGTGCCAACATGGAATGGACTGAACAACTGGAGATCCTCCGAGAACTTAATTCTGATTATTGTAAATACAAGTTATTATATGTAACACCTGAAAAGATTGCCAAAAGTGATAATCTTTTGCGACATTTGGAGAGTTTACATGTTCGCGAATTGCTTGAAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCCGATTATCAGGGACTTGGTATATTGAAACAGAAATTCCCAAATACTCCAGTTTTAGCTTTAACAGCTACAGCAACAGCTAGCGTAAAAGAAGATGTCGTGCAAGCACTTGGTCTTGTTAACTGCATCATTTTTCGACAAAGTTTTAATCGCCAAAACTTATGGTATTCTGTTATCCCCAAGACCAAAAAGTGTTTGGAGGATATAGACAAATTCATTAGGGAGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTTGCTGAAAAATTACAGGAATGTGGGCATAAATGTGCCTTTTATCATGCTAGTATGGATCCTTCTCAACGTGCCTCTGTTCAAAAGCAGTGGAGCAAAGATGAGATCAATATCATTTGTGCTACCGTGGCATTTGGAATGGGTATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTATCGAAGGCTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCAACGTGCATCCTGTGTATTATATTATAGCTATAGTGATTATGTGAGTTACTGTGAAAATGATGTTGATTGTCGGCGCCTTCTGCAGCTTGCTCATTTTGGGGAAAAGTTCGATTGTTCAGCTTGTCAGAAAACATGTGATAATTGCTTGAAGATCACAAATTTCATTGAGAAGGATGTTACAGAGATTGCAAAGCAATTGGTTGAACTTGTTAAACTAACGGGACAGAGGTTCTCATCATCTCATATATTAGAAGTGTATCGTGGTTCCTTAAGCCAAATGGTAAAAAAACACCGGCATGAGACTCTGAGTCTTCATGGTGCTGGAAAGCATCTAGCTAAGAGTGAGGCTTCCCGCATATTACATCATCTTGTTATAGAGGATTTTCTTATGGAGGAAGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAATATTAAAGGTAAATGAGTCCAAGGTCCGTAATCTGGTTGCTGGGCAGAGAATTATATTGAGATTCCCATCCTCTGTAAAGGCATCAAAACCAGGGAAATCTGATGCAACTCCAGCTAAGGGTTCTCTGACATCTGGAAAGCTGAATGTCACACTATTTGACACTCCTGCGCCTCAGACTGAAGTGGATTTGGTAAAAGATGGGTTATTTTTCAGTTTGCTTTTGAAACTTCTATCTGTCTTGAATTATAGTATATTTAAGACAAATCTACTTCAGAATCTTTCAGCTAAGTTATACACTGCCCTGCGGATGTTGAGGACAAGTCTTGTTAGAGAAGCTGGAGACGGTGTCATGGCTTACCACATATTTGGTAATGCTACGTTGCAGCAGATAAGCAAGAGAGTGCCGAGAACAATAGAAGAACTCCTTGATATCAATGGCATTGGCAAGGCCAAGGTAAGCAAATATGGGGGTCGATTACTGGAAACCATTGAAAATACCATAAATGAATATTACAAGCTGGACAAAGTCAGGAGCGGCAGCAAAGGCAGTTCAGACTCTGTCAAAAGGAGACGAGTGTCAAATGGAGATCCAGATGTTAATGATGCCCTCACCAATAGTACTGGTCGTTCAAAGAAAAGGACGGTGAAGAGACAACATAGTAAAGCTGTGATATATGATTCGGAGGAAGATTATTTTGGTGGATGCCCTGATGAAGACCTAGATTTTGACGTCGTAGAAATTGATGCATTAGATCAAGTGGCTTGTAAAAATGATGCAGGAAGAGTACTACCTCAATGGACAGCACCTTGAAATACTCTACATGCCCCTTCACAATACGTATGTTGTCATAGGGCTTTTGGTGGTACTGATTTGTAGTAATTTATAGTTGTTGGAAGAACCGTGTTCCATCCGCTGATCACCCAGAAAAACTCTTGATTACTTGTATTTCTACCACAATCATAGTTGTCCAGTTTAACTATGCCGCAGGTCAAGGGCGAATTTAATTTGTGAAAATGTATGGAAAACTGACACTTTTTTTTTTTTGTAAAGAATAGAAAAAATTATTAAGGTGA 3952 0.3995 MRQGEANSALGVKGVDKFNWLHHANAHENFSSQSKFLSSHFLFSDPSKKPISATAGFILRRSETIQGSQRVQLEKAWTALSNLQSSSRSYVQPGKSVEVTPQPHEDRKTTSFYGGYENVNRTCPDVTVTPIIINHTTQGLDGSVNNHTKYTDQLNESSSCMVGDIDDDILENIDVDQIVEKYQSTCTPKPSIPSPKLPPITPTADKDNSAGQEDNVLPPELCLDCIHGYKLGLCPEAASHLQELKDNLIAISNELLDNGENLNATQIAKLRQDRSHLNKQIQQLERYIQSGNLNEERQKSHFSASTAPPTSFVYETPRQTVLCNGSKGYDSQAYMGNGSYVSSFQSLPSFSVDKYSMSLGPVEREVFVPKIIEVNYIEGSGDKRWSSRDFPWTKELEVNNKKVFGNHSFRPNQREIINATISGCDVFVLMPTGGGKSLTYQLPALIRRGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWTEQLEILRELNSDYCKYKLLYVTPEKIAKSDNLLRHLESLHVRELLERIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRQNLWYSVIPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHASMDPSQRASVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYSYSDYVSYCENDVDCRRLLQLAHFGEKFDCSACQKTCDNCLKITNFIEKDVTEIAKQLVELVKLTGQRFSSSHILEVYRGSLSQMVKKHRHETLSLHGAGKHLAKSEASRILHHLVIEDFLMEEVKKSDFYGSVSSILKVNESKVRNLVAGQRIILRFPSSVKASKPGKSDATPAKGSLTSGKLNVTLFDTPAPQTEVDLVKDGLFFSLLLKLLSVLNYSIFKTNLLQNLSAKLYTALRMLRTSLVREAGDGVMAYHIFGNATLQQISKRVPRTIEELLDINGIGKAKVSKYGGRLLETIENTINEYYKLDKVRSGSKGSSDSVKRRRVSNGDPDVNDALTNSTGRSKKRTVKRQHSKAVIYDSEEDYFGGCPDEDLDFDVVEIDALDQVACKNDAGRVLPQWTAP 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01544 1138 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 617 776 IPR001650 -
Pste2g01544 1138 MobiDBLite consensus disorder prediction 185 213 - -
Pste2g01544 1138 Pfam Helicase conserved C-terminal domain 616 722 IPR001650 -
Pste2g01544 1138 Pfam RecQ zinc-binding 734 773 IPR032284 -
Pste2g01544 1138 FunFam ATP-dependent DNA helicase RecQ 382 599 - -
Pste2g01544 1138 SMART helicmild6 642 723 IPR001650 -
Pste2g01544 1138 Gene3D - 777 892 IPR036388 -
Pste2g01544 1138 Gene3D HRDC domain 957 1043 IPR044876 -
Pste2g01544 1138 SUPERFAMILY HRDC-like 955 1036 IPR010997 GO:0000166|GO:0044237
Pste2g01544 1138 CDD SF2_C_RecQ 600 730 - -
Pste2g01544 1138 SMART ultradead3 405 608 IPR014001 -
Pste2g01544 1138 MobiDBLite consensus disorder prediction 91 110 - -
Pste2g01544 1138 FunFam ATP-dependent DNA helicase Q-like 4A 780 890 - -
Pste2g01544 1138 PANTHER DNA HELICASE RECQ FAMILY MEMBER 378 1047 - -
Pste2g01544 1138 Pfam RQC domain 779 893 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pste2g01544 1138 Pfam DEAD/DEAH box helicase 411 579 IPR011545 GO:0003676|GO:0005524
Pste2g01544 1138 ProSiteProfiles HRDC domain profile. 960 1042 IPR002121 GO:0003676
Pste2g01544 1138 FunFam ATP-dependent DNA helicase recQ 600 732 - -
Pste2g01544 1138 Coils Coil 267 287 - -
Pste2g01544 1138 Gene3D - 600 776 IPR027417 -
Pste2g01544 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 737 IPR027417 -
Pste2g01544 1138 MobiDBLite consensus disorder prediction 1046 1088 - -
Pste2g01544 1138 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 417 592 IPR014001 -
Pste2g01544 1138 NCBIfam RecQ family ATP-dependent DNA helicase 401 738 IPR004589 GO:0004386|GO:0006310
Pste2g01544 1138 CDD DEXHc_RecQ 400 599 - -
Pste2g01544 1138 SMART RQC_2 782 892 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pste2g01544 1138 SMART hrdc7 960 1042 IPR002121 GO:0003676
Pste2g01544 1138 MobiDBLite consensus disorder prediction 1046 1065 - -
Pste2g01544 1138 SUPERFAMILY "Winged helix" DNA-binding domain 781 891 IPR036390 -
Pste2g01544 1138 Gene3D - 373 599 IPR027417 -
Pste2g01544 1138 Pfam HRDC domain 964 1032 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01544 Pste-Chr2 16472490 16484266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01544 631 736 Eukaryotic Initiation Factors Gene Family AT3G19760 21.698 1.37e-06 50.1