Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01474 GTCGGAATATGGCAGGGTCCAAACTCGAAACCCAAAAGGCTCGTCCTGAAGCTTGAAGCCATCCCCACCCCTAAATTTTGTGTAGGGCCTCGATTCGGCTAAGGCTGATCCACGTGGCGTCCCCTGATTGAACAATAATCAGATCTCCCAGGCCCCACCAGATAGAGTTGGACTCACTCCACTCGACTTGTTTCACATAATCACGCCTCCCATCCACACAAGAATCAAACACATCACAGGAAGGAAGCCACCAACCATGGCTTCCAAGCTATGCGACTCTTGCAAATCAGCCACCGCCACCTTGTACTGCCGTCCCGATGCCGCCTTCCTCTGCGGCGCATGCGACTCCAAAGTCCACGCCGCCAACAAGCTCGCCTCACGCCACCCCCGCGTCTCCCTCTGCGAGGTCTGCGAGCAGGCTCCCGCTCACGTCACCTGCAAGGCCGACGCCGCCGCTCTCTGCCTCGCCTGCGACCGCGACATCCACAACGCCAACCCCCTCGCCAGCCGCCACGAGCGCCTCCCTGTCACTCCCTTCTTCGAGTCCGTTCACTCCGTCAAGGCCTCCTCGCCTATCAACTTCCTCGATGACCACCGCTTCTTCTCCGACGCCGACCCTGACGTCAGCACCGAGGAGGCTGAGGCCGCCTCCTGGCTCCTCCCTAATCCCAAGACAGATCTCAATTCCTCTCAGTACTTGTTCTCCGACTCCGAACCTGTTCCTTACATAGATCTGGATTACGCCGCCGTAGATCCCAAGGCCGAGCAGAAAAGCTCCGCTACTGCCGACGGCGTTGTCCCGGTGCAGAGCAATTACGAGCCCTTCGCGTACGGCTACAAGTACAATTCCAGTCTGTCGCAGTCACAGTCTCAGATGAGCCATAGTGTATCGTCGTCGTCGATGGAGGTTGGAGTTGTACCGGACGGGAACACTATGTCGGAGATATCGAACTGCAGCTACAACAAGGTAGCGCCGGTGACGGTGACGGTGACGGCGCAGTTCTCGGCGGCCGATAGGGAGGCTAGAGTTTTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACGATTCGTTATGCATCGAGAAAAGCGTATGCGGAAACGAGGCCAAGGATCAAAGGCAGGTTCGCGAAACGCACTGATGTGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCCTGTTGATTTCACTAGTGTTATAGTAATATATTATGAAATGATGATGATAATGGTGCTATTGCTTACTTTTTGGTTTCTTATGTTTGCTTTTGATGTATATATGCTACGCTCTTCTTTGTATGAATTAAGCAATGTAAAGTTGCAAACGATTGATGTGGATCCATTTTGTATTTTATTTTCATTTTGGTTGGCATTTTTTATTGTCTGAGAGGAATTGGAAAAGGAGGCCATGGCAATAGAACTTCCTTTTCAGCTATGGCTGCTGTTGGCAGATTTGGCAAATCAAAGTCTGGAATGCTATTGGTACTACTGGAAGTGTGATTAAGAGCTTTTTTAATCACAAATCATATTTAATGCTATCTGTAATATTTTTAAATTTATTATTTTATTGTACTTTTTACAAGTTGTTGGATACTAGTATTTTATTACTATTAACCTTTATTATTGCGA 1636 0.5012 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVSLCEVCEQAPAHVTCKADAAALCLACDRDIHNANPLASRHERLPVTPFFESVHSVKASSPINFLDDHRFFSDADPDVSTEEAEAASWLLPNPKTDLNSSQYLFSDSEPVPYIDLDYAAVDPKAEQKSSATADGVVPVQSNYEPFAYGYKYNSSLSQSQSQMSHSVSSSSMEVGVVPDGNTMSEISNCSYNKVAPVTVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVDPLAGYGVVPSC 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01474 311 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 299 IPR045281 GO:0009909
Pste2g01474 311 Pfam CCT motif 254 296 IPR010402 GO:0005515
Pste2g01474 311 CDD Bbox1_BBX-like 5 48 - -
Pste2g01474 311 ProSiteProfiles CCT domain profile. 254 296 IPR010402 GO:0005515
Pste2g01474 311 SMART bboxneu5 49 91 IPR000315 GO:0008270
Pste2g01474 311 SMART bboxneu5 1 48 IPR000315 GO:0008270
Pste2g01474 311 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Pste2g01474 311 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Pste2g01474 311 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Pste2g01474 311 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01474 Pste-Chr2 16058718 16060447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01474 1 310 C2C2-CO-like Transcription Factor Family AT5G24930 56.383 4.06e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pste2g01474 zf-B_box 1.1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01474 2 16058718 16060447 Pste2g01474 2 16058718 16060447 ECH