Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01472 GAAGAAGAAAAAAAATACAACCTAAATAGTAATAGTATGGTGCGGTGCGGTGTATAGAATTAAAAAGAGAAAGAGAGGGATCGTGTCGGCTTGAACCAAACACGACCTTATCGGCGATCCATTTTCGATCTGTGCGTGCTTTTCAATTCCTAAACCCTACCTACTTGCTTCTGCAATTGTGGTGAACTGGATCCATCTGGACGCACCATTTCGATTCAATTCTCATCTCATTGAATAGTTAGGGCAAATAAGAGTTCATTCTTCGACATGACTTCCGCTGCCTCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTCGTCACTCTTCCGCGCGAAGGGGAAAGAGTTTATTACTTCCCACAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAGGGTTTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCTCAAATAACTTTGCTTCCAGAAGCAGATCAAAGCGAGGTGACAAGCCCTGATGATCCTCTTTCCGAACCTCCTAGGTGTACAGTCCATTCATTTTGCAAAACGCTCACTGCTTCTGACACTAGCACCCACGGGGGTTTCTCTGTTCTTCGCAGACATGCAGATGATTGTCTGCCACCACTGGATATGACTCAACAGCCACCATGGCAAGAATTGGTTGCAACTGACCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGCAAGTTGTTTATTTGAAGGGCGAAAATGGAGAGCTGCGTGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCTTCTGTTATATCCAGTCATAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACAGGGACACTGTTTTCTGTATTTTACAAGCCCAGAACTAGCAGGTCTGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCCCAAAGTCATAAACTTTCTGTTGGGATGAGATTCAAGATGAGATTTGAAGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAAGAAATCGTCAGTCTGGGCTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACTGTCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGATCCACTAGTGTCTACTCCTCCTGCAAACATCCAACCATCCCAACGAAATAAGAGGTCACGGCCTCCAATTCTACCTTCAACAATGCCTGATTCATCTCTACAAGGTGTGTGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCTTCAACATGAACGGGATGTCTATCCATCACCCAAATTCAATTCCACTGCAACTGGTGGCTTTATTGGTTTTGGTGGGAATTGCTCTGCCTCCAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACACTACAGAATCCTTTTCACCTGTAGCACTTAAGGAATATGGAGAAAAGAGACAAGGGACTGCAAATGGCTGTAGGCTCTTTGGAATTCAGTTACTTGATAATTCTAATGGAGAAGAAAGTCTACCAATGGTGACTTTGTCAGGAAGGGTAGGTGATGATGGTCCCCTTCCGTCTTTGGATGCTGAATCTGATCAGCATTCTGAGCCATCAAATGTAAATCAGTCTGATATCCCTTCGGTAAGCTGTGATGCTGAGAAATCATACCTGCGGTCTCCTCAAGAGTCACAGAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTGGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAAATGTTTGACATCAAGGGTGAGCTCTTTGGATCGACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTTAGGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAATGAAGAAATTAAACCCAGTAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAATGTCTAGGGTCTTCCAATATTTCAGGTGTTCTATACAATAGATATTGGCATGAAAGTAGAAAGTAGAACATGAGAGAAACAAATATGAACCTGGCAAGCACTTCATCGTGGCCTGTAAGGAGAATGAACCTCAAACACTTCATTATTGCCTATAAGGAGGAGCATATCATTGGTATATTCCGCATCTATACAGGAGCAGTATGACAGCACAAAAGCAGAGGGCTGGTGTGATATAATGCTGTTTGATCTACCTTGAAAGATAGGCTTGGGATATTGTGGCTTTTCTATTTCTTTATAGCTCCGTTTTCTGAGTCTCGAAACCCATGCGTGCTCAGTTTTGGATGGGGCTGCGAGCGTGAAGAAATGTCTTCTGGTTAAGTATCTTATTATGTATGCATTTGTGGGTTTTTTTTTTTTTTTTTTTGTATTTCCCTTTATTTGATGCATCTAATTTCTGTATATATAACTTTCTAT 2757 0.4251 MTSAASGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVTSPDDPLSEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRQVVYLKGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDKKSSVWADSEWRSLKVQWDELSSILRPDRVSPWELDPLVSTPPANIQPSQRNKRSRPPILPSTMPDSSLQGVWKSPVESAPFSYRDLQHERDVYPSPKFNSTATGGFIGFGGNCSASNKSIYWSSRMENTTESFSPVALKEYGEKRQGTANGCRLFGIQLLDNSNGEESLPMVTLSGRVGDDGPLPSLDAESDQHSEPSNVNQSDIPSVSCDAEKSYLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELFGSTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVRKIFIYTAEEVKKLSPKIGLPINEEIKPSKMDSEAVVNPEDQSSIVGPGC 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01472 671 ProSiteProfiles PB1 domain profile. 547 640 IPR000270 GO:0005515
Pste2g01472 671 FunFam Auxin response factor 542 636 - -
Pste2g01472 671 SUPERFAMILY CAD & PB1 domains 549 624 - -
Pste2g01472 671 FunFam Auxin response factor 116 226 - -
Pste2g01472 671 MobiDBLite consensus disorder prediction 357 389 - -
Pste2g01472 671 Gene3D - 287 359 - -
Pste2g01472 671 MobiDBLite consensus disorder prediction 486 524 - -
Pste2g01472 671 Pfam Auxin response factor 250 332 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste2g01472 671 SMART B3_2 118 226 IPR003340 GO:0003677
Pste2g01472 671 FunFam Auxin response factor 287 359 - -
Pste2g01472 671 CDD B3_DNA 116 224 IPR003340 GO:0003677
Pste2g01472 671 MobiDBLite consensus disorder prediction 509 524 - -
Pste2g01472 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 636 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste2g01472 671 MobiDBLite consensus disorder prediction 650 671 - -
Pste2g01472 671 MobiDBLite consensus disorder prediction 359 389 - -
Pste2g01472 671 Gene3D - 542 636 - -
Pste2g01472 671 ProSiteProfiles B3 DNA-binding domain profile. 118 226 IPR003340 GO:0003677
Pste2g01472 671 Pfam B3 DNA binding domain 118 224 IPR003340 GO:0003677
Pste2g01472 671 SUPERFAMILY DNA-binding pseudobarrel domain 106 253 IPR015300 -
Pste2g01472 671 Gene3D - 115 226 IPR015300 -
Pste2g01472 671 Pfam AUX/IAA family 544 637 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01472 Pste-Chr2 16051370 16057423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01472 7 665 B3 DNA Binding Superfamily AT1G59750 71.795 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste2g01472 AUX_IAA 2.5e-11 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01472 2 16051370 16057423 Pste2g01472 2 16051370 16057423 ECH