Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01454 TGTACTTTACACACCACAACAAAGGTAGAGTTTAACAGTGGAGAGAAAGAAAAGAAGCATCATAAGAAGCCTACCATTGTTGGTGCTTCGAGTGCAGTCACACAGCTTCTGAGCCATTCAAAGTTCAGATCTTTATCTACCTTTTCTCTTCCATTGGGTGATACAGAATCAATTAATATGCGGGATGTGGACAATTTAAATAACAAAGGATCTGGAAAATCCAGTAACTTAAAGGGCCAGACTAAGTCCAAACTAGTTTCCTCAAAATTCAAGACAAGTAGTGCAAAACGCCAAGAGAAGAAACACAAAGTGAAGTCAAAATCTCCTAAACACAGAGTTGGTACAAGCACATCAAAGAAGACAGCTGCTGATTCTTCTATCAAGACACCACTTCAGGATTATTCAAATAAAAAAGTGATTATTAGAAAATATCCGCATAAAACAGATGGGAAATCTTCACAGATGCTGTCTTCAAAAAAGCTAGGAGGAAAAAATTCTCATAGTTCTGAAATAGAGGGGAATGATGTTGATGGGGAGGCAAAGATTAAAAAACATAGGAGAAGAAGAAAGAAGAAAAGACGAAGGAACATGGATCCTGATGATGCTTCACGGCTGCGAAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCCTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAGAAGCAGATTTTTAAATGCAAACTTAGTATTCGTGATGCCATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGTACGTGCAATCGGGCTTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGTTGGTTTTGCAAATTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCACATCTTGGGACTCAATTCTCTTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGACATTGCATTAGTAAATCCAGAAGAAGACTGGCCATCAGATGATCCTGAAGATTATGATTACAATCCGGAGGGGAAAGAAGACAGCCACGGCATGGACACAGCAGGAGCTGATGAAAATGAATCCAATGATTCAACCAGTTCTTCCAGTCTGTGTTCTTTGAATGGCGAATGTCCTCTAGTAGATGAAGGTGTCAGTCATGATTACTATTCTGTTAATAGCTGCATAGATTCGGATGAATCCGGGGAAATAGCATGTGGTCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAAGAGTCTGACGCTGTAAATACACTCATGACTCTGCACGAAACTGACAATAAATATCCCAGTAATAAGGAAAATGATAGAATAAGAGAGGGTTCTTCAGGCAAGCAAATAAAAAGATCTTGTTTCAGGATTCCACTTGATGCAGTTGAGAAACTTCGCCAAGCCTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAATCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCTCGTTACTTAGCACTTAAAGCCAGAAGGTATCAAACAGAAGGAGAACAGCTTCAGAGTTTCACTCCTAAGATTGCAAAGGATTCTATATCTCAAAACGTGGAGAAAGATGAGCTTTTGAAATCAAAGGTCTCCAAAATTACTTTGATTCATTCCCCGAAGGATGGTAAAGATATCACAGGCAAAGAGAAAATTAAATTATCTAACACTCTTTTGAAGAAAAGGCAACAAAAAATATCTCCACCTTCAGCAAAAGAAAATAACAAGGACTCTATGGAGGTCAGTGATGATGTTAAGTTGAAGAAACTGTTGAAAAAAAGGAAAAGAAGGTTAAATTTTATATTTGAAGGAGACTCTCGGGCAGCAGAGTTGGAATTTGAAAGACTAAGCAAAGTGAAAATTAAACTAGATATCATGAAGCAAAAACTAATAGAAGTTCAAAATTTCAGAGCAAAAGGTTCAAATAAACCCTATTCGAGTGAACCCTGTATTATATATGTACCCACGGCTTTGTTAAGGGAAAAGGCTGAATAATAAAAAACCAATTACATTTTTTATTACATTTTTCCCCTACAGGCTAATACATGATATGTTGTAAGTTTAATACCTTACATTGTAAATGAAAATGAAGTA 2424 0.3824 CTLHTTTKVEFNSGEKEKKHHKKPTIVGASSAVTQLLSHSKFRSLSTFSLPLGDTESINMRDVDNLNNKGSGKSSNLKGQTKSKLVSSKFKTSSAKRQEKKHKVKSKSPKHRVGTSTSKKTAADSSIKTPLQDYSNKKVIIRKYPHKTDGKSSQMLSSKKLGGKNSHSSEIEGNDVDGEAKIKKHRRRRKKKRRRNMDPDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQIFKCKLSIRDAIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAMPDGDIALVNPEEDWPSDDPEDYDYNPEGKEDSHGMDTAGADENESNDSTSSSSLCSLNGECPLVDEGVSHDYYSVNSCIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVNTLMTLHETDNKYPSNKENDRIREGSSGKQIKRSCFRIPLDAVEKLRQAFAENELPPRSVKDNLSKELGLDPEKVSKWFKNARYLALKARRYQTEGEQLQSFTPKIAKDSISQNVEKDELLKSKVSKITLIHSPKDGKDITGKEKIKLSNTLLKKRQQKISPPSAKENNKDSMEVSDDVKLKKLLKKRKRRLNFIFEGDSRAAELEFERLSKVKIKLDIMKQKLIEVQNFRAKGSNKPYSSEPCIIYVPTALLREKAE 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01454 774 MobiDBLite consensus disorder prediction 150 169 - -
Pste2g01454 774 FunFam pathogenesis-related homeodomain protein 547 611 - -
Pste2g01454 774 ProSitePatterns Zinc finger PHD-type signature. 293 344 IPR019786 -
Pste2g01454 774 Gene3D - 547 613 - -
Pste2g01454 774 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 73 743 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 60 92 - -
Pste2g01454 774 Pfam Homeodomain 558 600 IPR001356 GO:0003677
Pste2g01454 774 MobiDBLite consensus disorder prediction 115 130 - -
Pste2g01454 774 SUPERFAMILY FYVE/PHD zinc finger 284 349 IPR011011 -
Pste2g01454 774 MobiDBLite consensus disorder prediction 489 517 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 144 203 - -
Pste2g01454 774 CDD PHD_PRHA_like 292 344 IPR045876 -
Pste2g01454 774 ProSiteProfiles 'Homeobox' domain profile. 545 605 IPR001356 GO:0003677
Pste2g01454 774 CDD homeodomain 548 607 IPR001356 GO:0003677
Pste2g01454 774 SMART PHD_3 292 345 IPR001965 -
Pste2g01454 774 MobiDBLite consensus disorder prediction 379 430 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 60 130 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 669 685 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 404 418 - -
Pste2g01454 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 341 IPR013083 -
Pste2g01454 774 SMART HOX_1 545 609 IPR001356 GO:0003677
Pste2g01454 774 MobiDBLite consensus disorder prediction 669 689 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 389 403 - -
Pste2g01454 774 MobiDBLite consensus disorder prediction 95 114 - -
Pste2g01454 774 SUPERFAMILY Homeodomain-like 541 604 IPR009057 -
Pste2g01454 774 FunFam pathogenesis-related homeodomain protein-like 284 344 - -
Pste2g01454 774 ProSiteProfiles Zinc finger PHD-type profile. 290 347 IPR019787 -
Pste2g01454 774 Pfam PHD-finger 292 347 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01454 Pste-Chr2 15850344 15857468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01454 197 610 Homeobox Transcription Factor Family AT4G29940 57.820 5.89e-155 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pste2g01454 Homeodomain 1.6e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01454 2 15850344 15857468 Pste2g01454 2 15850344 15857468 ECH
Pste6g03781 6 26968284 26973835 Pste2g01454 2 15850344 15857468 PCT