Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01450 GGTAGTTGAAGGCTTGTTCTGTGATAACTGATCAGGGTTGTGTTTACTTCACAAAGCACAACCGAACCAAACAAGAGCGAATGCATTATATAAATGAGTGACACAAACACAAACAAGGCGTAGCGGTGAATCGAAGTTGAAATGACGGAGCAAACGAAGTTGAGCGTGTTGTGCAGTTTCTTCACATGGACGCAGCGAAGCAAATCCGCGGCGAAGAAGCGCGGCAAGTTCCGCAAATTCCTCGACGCGTTCTGCACCGACCGCAACTTCTTCCCCGCCATTCGCCTCATTCTCCCTAACCTCGATCGCGACCGCGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATTTCCCGCGACTCCCCCGACGCCCTCCGCCTCGTCAATTGGCGCAAGGGCGGCGCCGCCACTGGCGCCACCGCCGGAAATTTCGCCCTCGTCGCCTCCGAGGTGCTGCAGAGTAGGCAGGGGACTGCTTCTGGTGGATTAACGATCAAGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCTGCTGAAAACCGGGCTGAGAAAATTTTGGTTCTTTCTACCCTGATCGAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGAGCTAAAGCTGGGAATCAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAACGTTACCTGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATTGGAATCAACGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAAGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGTATTCAAATTCACAAAAATGGAACTGAGATACATTTCTTCTCAAGGCAAGTACATGTGAACTTTATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATACAAAATGTTCTTGTAGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTGAAACGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGGCATCACTACCATTTATTATTTTCTGTTTTTGGCAGCCAAGGCAGCAAGAGATGGACTTGATAGTGATAGACAGTTATGCTATTGGATAGATGTTGCATTTGATATCCTTTACTTTGGAGATACTAGTGTGATTCACCAAACTTTGAAGGAACGACATGAGATTTTGTGTAAAATTGTTAGGCCAATGAAGGGTCGTTTGGAAATATTGGTACCTAATGCTGGTATCAATAAACATCTTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAGGTTTTTCAAGGAAACTATTCAAAATAGTCGCTGGAGAAAGTTCTGCAATCATCGGAAATGGTGTGCAGCTGTCGGAGAAGGTCCTATAGTTGCCGGAGAAGGTTCTGCAGTCATCGGAAATGGTGTGTTTGTTTTTAGAAGATGGTGTGTCGCTGTCCACTCCAAGTGTTCATTGTGGGCAAAGGTTCAAATTGCTAAAGGAGGAAGTTTGGGGTTTAGATTGCAAAAGGAAGGGGTTTGGGTCAGGGTGCAAAAGGGGGATTTGAGAGATGAGGGCATTGTTTTAAAAGACCATAGCTCCAAATGGGAACCCAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCCGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGCTCAGGACGACGTGGAGGAGAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAGCGTCCATCACCAAATACCCACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCACTGATGACGAGCTTGATGCTGTAGTGACCAAACTTAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTACCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGATGTATTTGCTGCACCTTACAGTCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGTATGAATGCCTTGATGTTCAATCATTTATAGAACTAGTTCATTCTAGCAATGGTACCACACAGAGGGATAGAGAATATGGCAGCAAACAAGACAGTAAACCAAAACGAACAAAATCCTCCTCTAGGGGAGGAAAGAAAAACATGCCCATTGTTCCTTCTCATTTAATTCGGACTGATGTTACCATTGTTAAGGGGAATTCCTCAATATTTTCCGATATGATGTTCTACTTTGTTAATGTGCCTCCATCTCATTCTCTCGAGTCCTTGCACAAAATAATTGCTGAAAATGGGGGAACTTTTTCAATGAATTTGAATAACTCGGTCACACACTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCTGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTATTAGATTGCTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACTCTTACTATTTGGACCTTAATCTTGGAGACATCAAGCAGGAGTTGAACTGTCTTGTTAATGTGAAAATCGAGCTCTTGAGTAACATTTATAGGTCAGAAGATGTCAGCACTGTTGATCATTACAGGAAAAAATACTGTCCAAAGGATAAGTGGTCTTTCTTTTCTGGATGCTCCATTTATTTCCACACTGTAATACCTTCATTGAAAGGAGATTGGCATTTTATGTTGCAACTTGCTTTGAGGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACATCTAATCTTACTTGTGCAACCCACTTAGTGGCCTTGATTGTGCCAGGATGTCAAACTGACTTTGAACAAATACAAAGTAGTTTCTCTTCCTTAGAAAGAAAAATTCTCCGAAGGAAGGAATTGCATATAGTTAAATCGCAGTGGTTAGAAGATTGTTCAGATAGGAGCCAAAGATTACCAGAAGACTCTTATAGTTTGAAGCCGTGTGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAGGACTCTGCAGTAGAGGCTCATCTGAGTTTAGATGATATAGAAACTCAAAATACATCTTTCTCTGGCAAGGGAAATCAACAGATAATTGCAGAAGCTGTGGGTGAAGACAGTATGGCTTTAGTAACCCAAGAGAAGGAAGGCAAAAGAAAAAGAGGAAGACCTGCAGGCAGTGGTATAAAAAAAGTAAAACCTGCTATCAAACAAGGTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTGCTAAAATATGTGAGTATGAATCATCGGATGAAAGTGATTCTCTTGTCAAAAGACCAATTGAGCAGGAGATTGACCCTAGAACAGAAAGTCTTTATTATTACGACAAACATTCTGAACCCCAGGAGACTGAGGAACATGAAAATGTCCAAGTTACAGAGGCTGCGGAAAGTTCTAAACAAAATAAGGTAGATAAGGAAGAGGGCTTGAAGGCCGGTGAGAGTGAAACAATATTTGTTCCTGAAATAGAAATGACTGATAGGCATAATGAGAATGAAAGAACATTGATTCCTGAAATAGAAATGACTGACAGGCACAATACTCAAAACAATGAGGTGACTGAGAAACTTGAAATTTCAGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTAGCCTTTCCACTCAAGTTGAGCAACCTGTGAATCATAGTGTTAGAGAAGATAAGCAACCTGTGAATCGTAGTGTTAGAGAAGAGAAGCAACCAGAAATCTCCAATGCAAAAGCAGAGCCTACAACTACAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTAGTCATTTGCTGAAGGACTGGTAGAGCATCATCTTACAAATGTATTGATAATATATAGGGAGTAAGAGTTCTTTTGCCATACTAGTTATCCAAATTCCAAATCTTAATTGTTTTCGGTGTCATAACTTGCAAATTTGTTATCTGGATTTTTTTCTAGAGGAAGAACTCACTAATTTATGCAAGAGTAACTATGTTAATATTCCTAACTTTTTTTTTTCTAATATTTTTCCTGGTTTCTTAAAATAAAAAAATGTTTTTTTTCATAGGCAAATGTTAGTTATTAGTGTGTTAGTTTTGTTAATTATGATTTCTTCTTTACTATATCTCCGCATATAGATTTTTATTACCAAACTAATTTTATAATTCCAAAATAAAAATATATGTAATGAGAATGTAAGAATATTTAATATGGTTATAAATAAAATGTTTAATGTTTTTTAAAGTAAGATAGTTGTCAACAGGACAAAGGAATACGTCATATTTTTCATCATGTGTTATTGAAATAACGTAATTTTTATATGATTTGGTTCAGCGGCCAGTAAAAGCAATTTGGTAGTCGTTTAATGGCTGGTTCAATTGAGATGTTA 4628 0.3995 MTEQTKLSVLCSFFTWTQRSKSAAKKRGKFRKFLDAFCTDRNFFPAIRLILPNLDRDRGSYGLKESVLATSLIDALGISRDSPDALRLVNWRKGGAATGATAGNFALVASEVLQSRQGTASGGLTIKELNELLDRLASAENRAEKILVLSTLIEKTNAQEMKWIIMIILKELKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDWNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRQVHVNFIDHSEYAHAMSEIIIQNVLVDRCILDGEMLVWDTSLKRFAEFGSNQEIGITTIYYFLFLAAKAARDGLDSDRQLCYWIDVAFDILYFGDTSVIHQTLKERHEILCKIVRPMKGRLEILVPNAGINKHLSSGEPCWSFIAHNVDEVERFFKETIQNSRWRKFCNHRKWCAAVGEGPIVAGEGSAVIGNGVFVFRRWCVAVHSKCSLWAKVQIAKGGSLGFRLQKEGVWVRVQKGDLRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLTDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESDVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDREYGSKQDSKPKRTKSSSRGGKKNMPIVPSHLIRTDVTIVKGNSSIFSDMMFYFVNVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDSYYLDLNLGDIKQELNCLVNVKIELLSNIYRSEDVSTVDHYRKKYCPKDKWSFFSGCSIYFHTVIPSLKGDWHFMLQLALRRFKLEVLMGGGKVTSNLTCATHLVALIVPGCQTDFEQIQSSFSSLERKILRRKELHIVKSQWLEDCSDRSQRLPEDSYSLKPCGIEESTAEDCEQDSAVEAHLSLDDIETQNTSFSGKGNQQIIAEAVGEDSMALVTQEKEGKRKRGRPAGSGIKKVKPAIKQGRRARPQNVKKPAKICEYESSDESDSLVKRPIEQEIDPRTESLYYYDKHSEPQETEEHENVQVTEAAESSKQNKVDKEEGLKAGESETIFVPEIEMTDRHNENERTLIPEIEMTDRHNTQNNEVTEKLEISADPLQAMLFDMIPSLSTQVEQPVNHSVREDKQPVNRSVREEKQPEISNAKAEPTTTKKKKVSYKDVASHLLKDW 1307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01450 1307 CDD OBF_DNA_ligase_IV 547 691 - -
Pste2g01450 1307 MobiDBLite consensus disorder prediction 709 723 - -
Pste2g01450 1307 Pfam BRCT domain, a BRCA1 C-terminus domain 752 835 IPR001357 -
Pste2g01450 1307 Coils Coil 126 149 - -
Pste2g01450 1307 MobiDBLite consensus disorder prediction 1257 1296 - -
Pste2g01450 1307 Pfam DNA ligase N terminus 9 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste2g01450 1307 MobiDBLite consensus disorder prediction 1153 1182 - -
Pste2g01450 1307 SUPERFAMILY Nucleic acid-binding proteins 548 699 IPR012340 -
Pste2g01450 1307 SUPERFAMILY BRCT domain 901 1021 IPR036420 -
Pste2g01450 1307 MobiDBLite consensus disorder prediction 1253 1296 - -
Pste2g01450 1307 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 101 207 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste2g01450 1307 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Pste2g01450 1307 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pste2g01450 1307 Gene3D BRCT domain 752 854 IPR036420 -
Pste2g01450 1307 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 430 - -
Pste2g01450 1307 SMART BRCT_7 916 1009 IPR001357 -
Pste2g01450 1307 SMART BRCT_7 752 828 IPR001357 -
Pste2g01450 1307 FunFam DNA ligase 765 880 - -
Pste2g01450 1307 MobiDBLite consensus disorder prediction 704 735 - -
Pste2g01450 1307 CDD Adenylation_DNA_ligase_IV 214 545 IPR044125 GO:0005524
Pste2g01450 1307 Pfam ATP dependent DNA ligase C terminal region 564 683 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pste2g01450 1307 ProSiteProfiles BRCT domain profile. 750 838 IPR001357 -
Pste2g01450 1307 ProSitePatterns ATP-dependent DNA ligase signature 2. 516 540 IPR016059 GO:0003909
Pste2g01450 1307 ProSiteProfiles ATP-dependent DNA ligase family profile. 359 434 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste2g01450 1307 ProSiteProfiles BRCT domain profile. 907 1019 IPR001357 -
Pste2g01450 1307 CDD BRCT_DNA_ligase_IV_rpt1 754 840 - -
Pste2g01450 1307 FunFam DNA ligase 1 218 - -
Pste2g01450 1307 SUPERFAMILY BRCT domain 754 839 IPR036420 -
Pste2g01450 1307 FunFam DNA ligase 543 704 - -
Pste2g01450 1307 MobiDBLite consensus disorder prediction 1076 1114 - -
Pste2g01450 1307 Pfam ATP dependent DNA ligase domain 226 396 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pste2g01450 1307 PANTHER DNA LIGASE 4 514 1300 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Pste2g01450 1307 FunFam DNA ligase 908 1019 - -
Pste2g01450 1307 Gene3D DNA ligase/mRNA capping enzyme 220 435 - -
Pste2g01450 1307 Gene3D DNA ligase/mRNA capping enzyme 508 542 - -
Pste2g01450 1307 Gene3D BRCT domain 907 1019 IPR036420 -
Pste2g01450 1307 Gene3D - 543 704 IPR012340 -
Pste2g01450 1307 ProSiteProfiles ATP-dependent DNA ligase family profile. 516 577 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01450 512 700 Core DNA Replication Machinery Family AT1G08130 30.457 9.11e-16 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01450 2 15790779 15815923 Pste2g01450 2 15790779 15815923 ECH