Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01439 AAGGAAGAGAAAAAACACACATCTTACCGTGCGGCGCAGCGAGGTTTTGAGTATCAAGCTGGAGAGAACCCTAGAAATCAATTGCACACTTTCGCTCACTCTGCCTCCGTAACGATAACACCGTTGCTGCTGCAATCATGGCGGACGTCATGGTAATGAAGGAGATCGAAGATACGGCGCGGCGTCTCGGCGTCAATCTCTCCACTCTCGATCTCGACGCCATTCGCCTCCCACCCGGCGAAAATGCCGGCATTGTTAGCGATGACGAGGAAATTTACCAGGAGGACAATCTCGAGTTCGAATCTGGTTTTGGTAATATCATTGTCGTAGATAACCTCCCTGTCGTGCCGAGGGAGAAGTTCGAGAAGCTTGAGGGAGTTGTTCGAAAAATTTACAGTCAAATTGGTGTTATCAAAGAGGATGGCCTCTGGATGCCGGTTGATCCTGAAACTGAAAAAACCCTAGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAAAAGACTCATGGCTACAAATTGGATCGTGCGCATATATTTTCTGTGAGCATGTTCGACGATTTTGATAGGTTTATGAAGGTTCCTAATGAGTGGGCTCCTCCAGAAACTAAGCCATATGCTCCAGGGGAAAATCTTCAACAGTGGCTCACCGATGCCAAGGCCAGGGACCAGTTTGTGATTCGGGCTGGTTCAGATACTGAGGTTTTGTGGAACGACGCAAGGCATCTAAAGCCTGATCCTGTTTATAAGCGGGCATTTTGGACTGAGAGTTTCGTGCAATGGTCTCCTTTGGGGACATACTTGGCCACTGTTCACAGACAGGGGGCAGCCGTTTGGGGAGGTGCTGCAAGCTTTAATAGACTTATGCGTTATGCACATCCTCAGGTAAAACTTATTGATTTTTCACCAGGCGAGAAGTATTTGGTAACTTATAGCAGCCATGAGCCTAGCAATCCTCGGGATGCCAATAGGGTTGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGACTTTAAAGGAAGTGCTGATGATTTTGCAGTTGGAGGTGCTGGCGGTGTAACTGGAGTATCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGATAAATACTTTGCAAGGATGGGAAAAAATGTACTTTCTGTATATGAGACAGAGTCCTTTTCTCTTGTTGACAAGAAGTCCCTAAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCTACTGATCCAATTATTGCTCTCTTTGTTCCTGAGATGGGCGGTGGTAATCAACCTGCCAGGGTTAGTCTGATTCAAATCCCCAGCAAAGAAGAACTTAGACAGAAGAACCTTTTCAGTGTCAGTGACTGCAAGATGTACTGGCAAAGCAATGGAGATTACCTGGCTGTCAATGTAGAGAGGTACACAAAAACGAAAAAAAGCACATACACAGGCTTTGAGCTTTTCCGTATAAAAGAACGTGATATACCAATTGAAGTTTTGGAGCTCGAGAACAAGAATGACAAGATCATTGCATTTGCTTGGGAACCAAAAGGCCACAGGTTTGCAGTTATTCATGGTGATAATCCTAAGCCAGATGTTAGCATTTACTCTATGCGTACTGGTCAGAACAGCCGAGTTTCAAAACTCACTACTCTGAAGGGAAAGCAAGCAAATGCTCTGTTTTGGTCACCTGCTGGCCGTTACATAGTACTGGCTGGGTTGAAAGGCTTCAATGGACAGCTGGAATTTTACAACGTTGATGAACTTGAAACCATGGCTACTGCTGAACATTTTATGGCGACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGCTTCAATATATGGTCTTTTAATGGCAAGCATCTATATCGGATTCTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCACCATCTTTCTTGAGTGCTGAGAAAGAGGAAGAGATTGCCAAGAACTTGAAGAAGTACAGTAAGAAATATGAGGCAGAAGATCAAGACGTTTCATTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGAATGCTGAAGGAAGAGTGGGACAAGTGGGTGAATGAATGGAAGAGGATACACGAGGAAGAGAGTTTACAGAGGCAAAAGCTTAGGGATGGTGAGGTTAGTGACGAAGAGGAGGAATACGAGGCCAAGGACATTGAAGTGGAGGAAGTGATCAATGTTACTAAAGAGGTACTTCGCCTTGAGTACGGTCAAGAGTAAGTTTTATATATAGACTTTGATTGGAAATTTTTTCACTTGTCGATGTTTAGTTGGGTCTGCCTACCTTGCTTTCATCTTTTGTAAAACCCAATTTTGTAGTCTTTTATTATTTATGTAGTCTTTCATTTTTTTTACGTGGAAGGAATTCCTTTTGTCAAATTTAATATGAAAGATAATCTCCTTTAGGTTCAGTCGTACTCGCTTCCTTGACAATAAAAAAATGCGTGCAGAATTAGTTAGTTAGATTATTATGTATTTTGTTTATAAATGCGCTTACACGTTGGTGTTTTCAACCAACTTTTTTGAGCTTATGAACTTAACTTTATAAGTTATGTGCGACTTGTTAGTTTTGCA 2648 0.4279 MADVMVMKEIEDTARRLGVNLSTLDLDAIRLPPGENAGIVSDDEEIYQEDNLEFESGFGNIIVVDNLPVVPREKFEKLEGVVRKIYSQIGVIKEDGLWMPVDPETEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFSVSMFDDFDRFMKVPNEWAPPETKPYAPGENLQQWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLATVHRQGAAVWGGAASFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAVGGAGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETESFSLVDKKSLKVENIMDFCWSPTDPIIALFVPEMGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVERYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPKPDVSIYSMRTGQNSRVSKLTTLKGKQANALFWSPAGRYIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLSAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEEWDKWVNEWKRIHEEESLQRQKLRDGEVSDEEEEYEAKDIEVEEVINVTKEVLRLEYGQE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01439 718 PIRSF Transl_init_eIF3b 7 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste2g01439 718 FunFam Eukaryotic translation initiation factor 3 subunit B 181 382 - -
Pste2g01439 718 Gene3D - 59 143 IPR012677 -
Pste2g01439 718 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 35 708 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pste2g01439 718 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Pste2g01439 718 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Pste2g01439 718 SUPERFAMILY DPP6 N-terminal domain-like 218 598 - -
Pste2g01439 718 CDD RRM_eIF3B 59 143 IPR034363 -
Pste2g01439 718 Coils Coil 617 637 - -
Pste2g01439 718 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Pste2g01439 718 MobiDBLite consensus disorder prediction 675 694 - -
Pste2g01439 718 SMART rrm1_1 61 143 IPR000504 GO:0003723
Pste2g01439 718 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 136 IPR000504 GO:0003723
Pste2g01439 718 Gene3D - 416 631 IPR015943 GO:0005515
Pste2g01439 718 Gene3D - 182 382 IPR015943 GO:0005515
Pste2g01439 718 FunFam Eukaryotic translation initiation factor 3 subunit B 411 625 - -
Pste2g01439 718 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Pste2g01439 718 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01439 5 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.620 0.0 1180