LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01429	AGAAATAAAAGGCCACAAAACCCTATTATATATATAGAACTCGTAGAATCCACGACTCTCTCAGTCCGCCGTTGCAAGCAGCACAAGATCGAGATGGTTGAAGAGGCTGCAAAACCGTTGGTTCCCGAATCGGTCGTGAAGAAGCTGAAAAGGAACGAAGAGTGGGCGCTGGCCAAAAAGCACGATCTCGAAGCCGCCAAAAAAAAGAGGTCTCAAACGCGGAAACTCATTTTCAGCAGAGCCAAACAGTACGCCAAGGAATACGATGAGCAGCAAAAGGAGTTGATTAGATTGAAGCGTGAAGCCAAACTTAAGGGTGGCTTTTATATTTTTAATGGTGTCTTTCTTAAAGTGAACAAAGCAACCGTCAATATGCTGCATAGGGTAGAGCCTTATGTTACCTATGGGTACCCTAATTTAAAGAGTGTAAGAGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAACAAAGAATTGCTCTGACAGACAACTCTATTATTGAAGAGACTTTAGGGAAGCATGGGATCATTTGCATCGAAGATCTGATCCATGAGATCATGACTGTTGGACCTCACTTCAGGGAGGCGAACAATTTTCTATGGCCTTTCAAGCTCAAAGCTCCCCTAGGTGGTTTGGAGAAGAAAAGAAATCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAAGTTTTTTGTCATAAATTTTGACTTTTGAGACCAAGACTATTTTCATTTATATGCATTTTGCTATTTTGAATGTTTGAGCTGATTGAAATATTATTAATTCACTGCTGGCAATTCATGAAAGTTTTCTTCTTTAGTTAAGTTAGTAGATTTGAATTGATAGCATTTCAGGATCTGCCACTTCTCTGGTGCAGCTATCTGATAATCTTCGAAA	937	0.397	RNKRPQNPIIYIELVESTTLSVRRCKQHKIEMVEEAAKPLVPESVVKKLKRNEEWALAKKHDLEAAKKKRSQTRKLIFSRAKQYAKEYDEQQKELIRLKREAKLKGGFYIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKVNKQRIALTDNSIIEETLGKHGIICIEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN	241

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01429	241	PANTHER	60S RIBOSOMAL PROTEIN L7	39	110	IPR039699	-
	Pste2g01429	241	FunFam	60S ribosomal protein L7	188	241	-	-
	Pste2g01429	241	Coils	Coil	81	105	-	-
	Pste2g01429	241	CDD	Ribosomal_L7_archeal_euk	94	241	IPR035808	-
	Pste2g01429	241	Gene3D	-	187	241	IPR036919	-
	Pste2g01429	241	Gene3D	-	94	186	IPR036919	-
	Pste2g01429	241	FunFam	60S ribosomal protein L7-2	108	187	-	-
	Pste2g01429	241	Pfam	Ribosomal L30 N-terminal domain	41	110	IPR012988	-
	Pste2g01429	241	SUPERFAMILY	Ribosomal protein L30p/L7e	110	241	IPR036919	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01429	Pste-Chr2	15569450	15572069	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01429	32	241	Cytoplasmic Ribosomal Protein Gene Family	AT3G13580	68.852	6.65e-122	345

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste2g01429	2	15569450	15572069	Pste2g01429	2	15569450	15572069	ECH

Showing 1 to 1 of 1 entries