Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01404 CACCTCTCTCACAACCCCCAACTATCCCAATATTTGACCCTTTTCTCTCTGTTTCTGTCTCCATTCTCTGCCATGGAAGATGATGAGGCATGCATCACAAGTCTAAGCCTTGGACTTGGAATAAGAGGGGGCCATGTGCCAAAGAAGGAGAAGCAGAAAGTCCCTTGCTTGGACCTATCTTTTGAGCTTTGTCCTAAAGCGGAAGAAGCCATTGACGTGGATCAACACCATCATGATGATAATATGGCAAAAGGCTTGTGCTTCAACCACCCTATTGAAAAGAGTCCTGATAGTAACCATAGCAATCACGGCAGCAGAAAGAAACTGAAGCTTACAAAGGAGCAATCAGCCACCCTTGAGGATATTTTCAAGCTGCATAGCACTCTTAATCCTGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAGACTGAGGTGGATTGCGAGTTCCTGAAGAAATGTTGTGAGAAACTAACCGACGAGAACCTAAGGCTGAAGAAGGAACTGCAAGAGCTGCGGGCACAAAGGATTGGACCAACACCACTATACATTCAACTATCCAAGGCCACAACCTTGACCATTTGTTCATCGTGTGAGAAACTGTTGAAGCCCAATGAAGGGAACAACAAAGGAACCATTTCCAATATAGTTCGAAACAGTAGCCACAAATTACAGAACAGCATAGAGCTAGGGGGTATTTAGAGGGTATAAGGAACTCATATTTTGGTGAAAGATATTGGAATGTCAGAATCAATGATCAAACATGGATAGTTAATTAATTAATCAAAAGAAAAGAAAGTACACATTCTCAGTCCCCACATCGAATAATTTGTATAGCCGTGTGTAGGACTGCGTATGGTATAGGCTAGCTAGATAGTTAACTTTGGGTGTCTCTTTCTATTCATTCAATCAAATATTAATCAAAATTTAACTCACCATTTGCTTTGTTTTACTTAACTTGTAAATGAAAAT 1032 0.4109 MEDDEACITSLSLGLGIRGGHVPKKEKQKVPCLDLSFELCPKAEEAIDVDQHHHDDNMAKGLCFNHPIEKSPDSNHSNHGSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQRIGPTPLYIQLSKATTLTICSSCEKLLKPNEGNNKGTISNIVRNSSHKLQNSIELGGI 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01404 229 CDD homeodomain 82 139 IPR001356 GO:0003677
Pste2g01404 229 SMART HOX_1 80 142 IPR001356 GO:0003677
Pste2g01404 229 Pfam Homeodomain 82 136 IPR001356 GO:0003677
Pste2g01404 229 ProSitePatterns 'Homeobox' domain signature. 113 136 IPR017970 GO:0000981|GO:0006355
Pste2g01404 229 SMART halz 138 181 IPR003106 GO:0006355|GO:0043565
Pste2g01404 229 MobiDBLite consensus disorder prediction 65 85 - -
Pste2g01404 229 Coils Coil 137 171 - -
Pste2g01404 229 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 205 - -
Pste2g01404 229 Pfam Homeobox associated leucine zipper 138 171 IPR003106 GO:0006355|GO:0043565
Pste2g01404 229 Gene3D - 73 143 - -
Pste2g01404 229 ProSiteProfiles 'Homeobox' domain profile. 78 138 IPR001356 GO:0003677
Pste2g01404 229 SUPERFAMILY Homeodomain-like 69 139 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01404 Pste-Chr2 15315074 15316574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01404 81 197 Homeobox Transcription Factor Family AT4G37790 74.359 9.12e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste2g01404 Homeodomain 1.5e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03695 6 26170892 26171795 Pste2g01404 2 15315074 15316574 PCT