Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01388 ATGTTTCCAAGTCACGTGAATGTCTTACAGTGATAGCTCTTAAGCTTGTTTTGTTTTGTGTGCCTGTTTTTATGTATGAATCCATGATACCAACTTATCGTTATTCACTCTCTTCTCCTATGTCTATAGATCTTAATAAAGATCACACCCACCAATTCTTCACTACAAAGCATCTAGACTCTTCTTCATCTTCTTCTCTATCTTATTCCATTCTCTTCAACTCCGATCAAGATCAAGATCAAGATCAAATAGAATCTTACTACTGGAAATCAAAGCACTTGCAAAATGATGAAAAGGCAGAGAAGTTTTTTCCTTCTGGTGGATCATGGGATCATTCAGTAGTGGAAAAAAATGAAAAGAGAAGTGATCTCAAGCTGAGAGTGTGGAAGGAAGATACGTGTGAAAATCTTCAAGATGTTGATGATTCAACAAAGTGGATTCCAAAGATGAGAATTATGGGGAGCATGATGGCGTCAGATCAAAGGGGTTCTGATATAGCAAGCATCTCTAACTCTAAGAATATCATGGATGAAGAGAAAAACCCTCCTCCGTCGCCTCTAGGAACTGATGATAGTAACTACAATTCTTCTTCAAATCACAGCAATGTCAATGTTAGGGTTTGTTCTGATTGTCACACTACTAAGACTCCTCTATGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGTGCCATTGCTGCGGCTGCAACAGCAAATGGAAAGAATCTGGAGGAGACTAAGAAATCTGAAGTGAAAAAGGGAAACAAATTGCATAGCAAAGGCATGAAATCAAAAACTGAGAGTGCACCACAGTTGAAAAAGAAACCTAGACTTGGAGGCAAATATAGAAATAGGTATAGTGCTTTTGAAGATTTGACATTAAGATTGAGTAAAAACTTGGCTCTCCAACAAGTTTTTCCTCCGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTCATGGCCTACTTCATGGCTTTCCATCACATCGTTATATTACTTAGATTTAATTATGAGATTGGTTGTAAAACCATAATTGTATGAGACCAATGAATTATGCTTAGTGTTGTGCTAGATTTAGCGAAGTTAGTATGGCAAACTTATGAGGACAACAAAGTTATGAGGTGAGTGGTTTTATCAAGTTAATTTTATGTTGGATGCTGTCTAATTGTTAGCAACAATGAGTATCCTATAATCTTATGTCAATAAATTGATAAAATTCC 1262 0.374 MYESMIPTYRYSLSSPMSIDLNKDHTHQFFTTKHLDSSSSSSLSYSILFNSDQDQDQDQIESYYWKSKHLQNDEKAEKFFPSGGSWDHSVVEKNEKRSDLKLRVWKEDTCENLQDVDDSTKWIPKMRIMGSMMASDQRGSDIASISNSKNIMDEEKNPPPSPLGTDDSNYNSSSNHSNVNVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKARRAIAAAATANGKNLEETKKSEVKKGNKLHSKGMKSKTESAPQLKKKPRLGGKYRNRYSAFEDLTLRLSKNLALQQVFPPDEKEAAILLMALSHGLLHGFPSHRYIT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01388 323 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 5 315 - -
Pste2g01388 323 Pfam GATA zinc finger 184 217 IPR000679 GO:0006355|GO:0043565
Pste2g01388 323 CDD ZnF_GATA 183 211 IPR000679 GO:0006355|GO:0043565
Pste2g01388 323 ProSitePatterns GATA-type zinc finger domain. 184 209 IPR000679 GO:0006355|GO:0043565
Pste2g01388 323 MobiDBLite consensus disorder prediction 162 179 - -
Pste2g01388 323 MobiDBLite consensus disorder prediction 231 268 - -
Pste2g01388 323 ProSiteProfiles GATA-type zinc finger domain profile. 182 214 IPR000679 GO:0006355|GO:0043565
Pste2g01388 323 FunFam GATA transcription factor 21 178 260 - -
Pste2g01388 323 Gene3D - 180 265 IPR013088 GO:0006355|GO:0008270
Pste2g01388 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 181 219 - -
Pste2g01388 323 MobiDBLite consensus disorder prediction 149 179 - -
Pste2g01388 323 MobiDBLite consensus disorder prediction 231 262 - -
Pste2g01388 323 SMART GATA_3 178 229 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01388 Pste-Chr2 15201510 15203536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01388 47 315 C2C2-Gata Transcription Factor Family AT5G56860 35.000 2.34e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste2g01388 GATA 5.2e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g03686 6 26068173 26069921 Pste2g01388 2 15201510 15203536 PCT