Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01354 CTCCTTTTGTTCTTGTGTGCCTTCAGTGCTTGTTACTACTACTTTTCAAACTCCTAAAACTTTCTGAACAAAAGAAGACAATATCATTTTCCCATAGCAGGTGGTGTTTTTTATATTTATTTTCTTTTTTTGGGCACTGTTTCTTTTATTTATTTTCTCCTCCACTCACTGGGGTTTCACACTCCATATCATGATGTCTCATATACATATGTCCTCAGAGTGGGATCAAAATAACCTACTTTAGTACTTTTCAAAACCCTTTCTTTCATCCATTCTTTCCTTTCACACGTGAAACAAATATACATCTTGAAATTTTCAATAGCTAAGTTGTTTACATTGTTTGAACATTATATGTCTCCCCAGCTATCCAGCGAGCTAGCTAGCAGCTAGAAACTTCTATTCTTCCCTTCTATCATATCTCTTTATAATATCTTTGTTTATTTTGTCAATGAAACCAAGCCATGCCACACTCCCTCTATAGGAGGAGATTGTATTTCATAAAAAGAAATCCAAATGGCATATAGAAAGAGAAAAAGAAGTATCACAAAGCATGTACTCTTCTATCTCATAATCATGATGCAGAAGCATTAATAGGTCAAGCTCCATGCACCCCATGGAAGGTGTCTTCTCTATTTCTGTGGCCGCCAGGAATGATTTTATCCAATTTCTGGTGCACTCTTTTGGCTGCAGTTACATTTGTCTATGGGCATACGATTCCATTTCACCCAATCGTTTGAGATTCTTGGATGGTACTGCAAGCTCTAGCTTGGGGACTTTAGCACAACAGCTTTTCAGTCAGCTCCAGACTTTAACCTTTGATGTCAATGATGACCGTGTTCCTGGACTAGCCTTTAGGAATCAACGGCCCTACCTAGAGCTGCAACAACTGGAACTTCTGAGACTAGCATCCACAGAAATACAAACACAATTCTTTCGGGAGGCAAGGATTAAGACTGCTGTTTTCATGGGGTGTAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAGTTGACATTCAAACAGCACTTAGGAGTTTGTTTCCTGAAGACTTTTCAACAAGACAATCCCAGCAAATTGATCAAAACCCCCCTACATCATCTTCATCTTCATTGAGATCAATTTCCACAGGTAGCCCTGAATACTCATCCCTTCTGTTCAGTATTCCAGGTACTTGTCAACCCCACTTTCCTGAGACCCTTGGAGGAGCAAGAGTGCCCCCAATGCAGCCAGTGCCAAACACAGCCACTAGTACTCCTCACCAACAGGCCATTCAAGCATTGGCACAAGTCCCTCTAACCCAATTCCCCACACCAGAAAGTGAACATGATGCAATCATGAGAGCAATCCTCCATGTCATATCTCCAACTTCTCATCAGCACCAACACTTACCTTATGTGGTGCATCCAGAGGCTAGTGCATTCCAGAGGTATAGACCAGAGATAGGTCCCAATATGGCCTCCAATTTTAGAAGACAAAACCTCATGAAGAGATCTTTTGCATTCTTCAATAATTTAAATTTTATTAGAATGAGAGAACGCATTCAAACAACGCCCCGTCCCACTAATACTCAGCTGCATCATATGATCTCAGAAAGAAGAAGGCGTGAGAAACTAAACGAGAATTTCCAAGCTCTTAGATCACTACTTCCTCCGGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCTGCAAAGGAGACATTGAGCCGTTTGATTGCTGAAGTTGACGAACTAAGCAAAAAGAATCAAGGGTTGACGTCACTTTTGCCAGCCAAAGAATCTACAACTGAAGAAACCAAGGCCAGTAATTTATCACCAAATGAAAGATTGAATGTTCGAGTTTCACAAGTACCCGAATCAAGCTCATCAGAAGAGAGAATGGTGGACGTGCAAGTGAACGTTAGAGGACAAGTTTCTCAACTTGATTTATTAATCCGGTTATTGGAATTTTTAAAACAAGCTCACCAAGTGAGCTTGGTTTCCATGGACGCAAACGCTCACATTGCAGAAGGGAACAATATTGATAATGCTCTTCACCAATTAATCTTCAGATTAAGGATTATTCAGGAATGGGACGAGTCTGCCTTCGAAGAAGCAGTGAGAAGAGTGGTTGCTGACTTTGCACTGTACCAATTTGACCATTAACTTTGACCACTCTTTCATTTTTATTCTGTGCCCTTCCTCTTAATCCCATCAAATTCAAATCCATCACTTATATGCTGCTTTCATAATTAAATTTGTTTTATTAATCATGTATACATAGTTTATAGTAATAATTTGTATTTCTTTCAGTGT 2302 0.3962 MHPMEGVFSISVAARNDFIQFLVHSFGCSYICLWAYDSISPNRLRFLDGTASSSLGTLAQQLFSQLQTLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTEIQTQFFREARIKTAVFMGCNKGEIELGFLNMSQVDIQTALRSLFPEDFSTRQSQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSIPGTCQPHFPETLGGARVPPMQPVPNTATSTPHQQAIQALAQVPLTQFPTPESEHDAIMRAILHVISPTSHQHQHLPYVVHPEASAFQRYRPEIGPNMASNFRRQNLMKRSFAFFNNLNFIRMRERIQTTPRPTNTQLHHMISERRRREKLNENFQALRSLLPPGTKKDKASILIAAKETLSRLIAEVDELSKKNQGLTSLLPAKESTTEETKASNLSPNERLNVRVSQVPESSSSEERMVDVQVNVRGQVSQLDLLIRLLEFLKQAHQVSLVSMDANAHIAEGNNIDNALHQLIFRLRIIQEWDESAFEEAVRRVVADFALYQFDH 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01354 515 Coils Coil 362 389 - -
Pste2g01354 515 CDD bHLH_AtbHLH_like 328 380 IPR045239 -
Pste2g01354 515 SMART finulus 329 378 IPR011598 GO:0046983
Pste2g01354 515 Pfam Helix-loop-helix DNA-binding domain 327 372 IPR011598 GO:0046983
Pste2g01354 515 Gene3D - 316 388 IPR036638 GO:0046983
Pste2g01354 515 MobiDBLite consensus disorder prediction 153 177 - -
Pste2g01354 515 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 387 IPR036638 GO:0046983
Pste2g01354 515 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Pste2g01354 515 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 102 507 IPR044658 -
Pste2g01354 515 MobiDBLite consensus disorder prediction 198 220 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01354 15 509 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 41.078 4.01e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste2g01354 HLH 6.8e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01354 2 14841968 14847522 Pste2g01354 2 14841968 14847522 ECH