Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01333 ATGTTCAGTACACTGCATCAGATTATTCAATTTTTACTTTCTATAGCTAAATTTGCTATCATGGCTGGGTTGGCACCTGAAGGATCCCAATTCGATGCTCGTAATTATGATGCTAAGATGAATGAGTTACTTGGAACTGATGGGGAAGAGTTTTTCACTTCTTATGACGAAGTTTGCGAAAGCTTTGATGCTATGGGATTGAAGGAGAACCTTCTGAGGGGTATTTATGCATACGGTTTTGAGAAGCCCTCTGCAATTCAGCAAAGGGGGATTGTTCCTTTCTGCAAGGGGCTTGATGTAATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACATTTTGCTCTGGGATTTTGCAGCAGCTTGATTACAGCATAGTTGAGTGCCAGGCACTAGTTCTTGCTCCTACTCGGGAACTTGCTCAACAAATTGAGAAGGTAATGCGAGCACTAGGGGACTTTCTAGGTGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTTCGTGAAGATCAACGCATTCTCTCAAGTGGGGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGACATGCTGCGTAGGCAATCTTTGCGCCCTGATTACATCAGGATGTTTGTATTGGATGAGGCAGATGAGATGCTCTCTCGAGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCACCTAAGATCCAGGTTGGGGTTTTCTCTGCCACAATGCCTCCTGAGGCCCTGGAAATCACAAGGAAGTTTATGAACAAACCTGTGAGGATTCTTGTAAAACGTGATGAACTTACCTTGGAGGGGATCAAGCAATTTTTTGTCAATGTAGACAAGGAGGAATGGAAGCTCGAGACACTATGTGATCTCTATGAAACTTTGGCAATCACCCAGAGTGTCATCTTTGTGAACACGAGGCGCAAGGTAGATTGGCTGACAGACAAAATGCGGAGTCGTGATCACACAGTTTCAGCCACCCACGGAGATATGGACCAAAACACAAGGGACATAATCATGCGGGAATTCCGGTCTGGGTCCTCCCGTGTTCTTATCACCACTGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTTATAAACTATGATCTGCCAACTCAGCCAGAGAACTATCTCCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGAAAGGGTGTTGCTATCAATTTTGTGACCAAGGATGATGAAAGGATGCTGTTTGACATCCAAAAGTTTTATAATGTGGTGATTGAGGAGCTGCCAGCCAATGTAGATGATCTCATTTGATTTGCCCATCCATACCTTCATGGTATGCTTTTTATTAAGGAGGCTGCAAATTATCTTATTTTTCATTGCCCAGGGCGGCCTTTCTCGAGAAAGACTTGAACTTAACTCCAAACCGGTGATTTGGAATGGGCCTATTCTTCTCTAGTTTTGGGTCTAGCAGAACGCATTGTTGCAATTTTGTTGCTTACTTGTTTGTATGTCTCTCACTAAAAGATTGTAGATTGCCGCTTTATGTGTGTTTTGTTTTAATATCCGTGAGGTGGGTGTGTAAATTGCAAACTTTTTAACGTTATGTTGGAAATATACTGGACTTCTCATTGTCATCCCGTTGATTATGTACCTGTCGGACTTCTCATTGTCATCCCGTTGATTATGTACCTGTCGTA 1688 0.4331 MFSTLHQIIQFLLSIAKFAIMAGLAPEGSQFDARNYDAKMNELLGTDGEEFFTSYDEVCESFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSIVECQALVLAPTRELAQQIEKVMRALGDFLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFFVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVDDLI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01333 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 414 IPR027417 -
Pste2g01333 433 PANTHER RNA HELICASE 56 417 - -
Pste2g01333 433 Gene3D - 269 433 IPR027417 -
Pste2g01333 433 Pfam DEAD/DEAH box helicase 85 246 IPR011545 GO:0003676|GO:0005524
Pste2g01333 433 FunFam Eukaryotic initiation factor 4A-III 268 433 - -
Pste2g01333 433 FunFam Eukaryotic initiation factor 4A-II 48 267 - -
Pste2g01333 433 SMART helicmild6 313 394 IPR001650 -
Pste2g01333 433 Pfam Helicase conserved C-terminal domain 286 394 IPR001650 -
Pste2g01333 433 CDD DEADc_EIF4A 64 262 - -
Pste2g01333 433 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 91 261 IPR014001 -
Pste2g01333 433 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 60 88 IPR014014 GO:0003724
Pste2g01333 433 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 207 215 IPR000629 -
Pste2g01333 433 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 272 433 IPR001650 -
Pste2g01333 433 CDD SF2_C_DEAD 273 403 - -
Pste2g01333 433 SMART ultradead3 79 276 IPR014001 -
Pste2g01333 433 Gene3D - 50 268 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01333 Pste-Chr2 14653583 14656420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01333 21 433 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01333 2 14653583 14656420 Pste2g01333 2 14653583 14656420 ECH