Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01306 ATTTTTGTAAATCCTAATCTTAAGAAACACACTCCTTCTTCAAATCTCTCTTCATTCTTCTTCAAATTATCTCTTCCAGTTCAAGCCCAATGGATGGTGGCGCTCACTACAACCCTCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGAGCCGGCATTATCAAGGCCCTCACCACTGACGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAGGAGAATCTATGTCTTTATGGATACCCTAATGAACAATGGGAAGTTAATTTGCCTGCTGAAGAAGTTCCCCCAGAACTTCCCGAACCTGCATTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGATTGGCTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAATCAGTAGCTTTCTACTTTGGGGCAAGATTTGGTTTTGACAAAGCTGACAGGAAACGCCTGTTCACTATGATCAATGATCTGCCTACAATATTTGAGGTTGTAACAGGAGCTGCAAAGAAACAGGCAAAGGAGAAGTCATCAGACCATAACAGCAGCAAATCAAAGTCTGGATCAAAAGGGCGAGGATCTGAAACTGGAAAGTATTCAAAGCTAGTAAAGGATGAGGACGAGGGATTGGACGAAGAGGAGGAGGAGGAGCACGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTATGCATCTGATGAATTCTGGATTTGCTGCGACATGTGTGAGAAGTGGTTTCATGGAAAGTGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAACATTACAAGTGCCCCTCATGCACCAGCAATAAGAGAGCAAGGCCTTGATATCATAGGGATGTGGTTAGCTATCACACCCCTGTAAATCATGCTGGACTGCTAACTAGTTAGTCGTGTAGGCATTCTGTGTTGTGCCGTGTTGGTGGATCGTAGGTGGTATTCGGTAGTTTGGTTTAGCAACTTAATGTGGATAGAATTATTTAATATTTGATAGTTTTCTGGTTCTGAACATCTCTAACTTTGTCCTGCATTGGGATATTTATGTTCTTTTAGTATTTGATAACATTTGTGCTTATATATTATCAATTTTCTTTCA 1107 0.4327 MDGGAHYNPRTVEEVFRDFKGRRAGIIKALTTDVEEFYQQCDPEKENLCLYGYPNEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGAAKKQAKEKSSDHNSSKSKSGSKGRGSETGKYSKLVKDEDEGLDEEEEEEHGETLCGACGENYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPSCTSNKRARP 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01306 249 MobiDBLite consensus disorder prediction 144 158 - -
Pste2g01306 249 Pfam PHD-finger 195 243 IPR019787 -
Pste2g01306 249 PANTHER CPG BINDING PROTEIN 8 248 IPR045104 GO:0006355|GO:0042393
Pste2g01306 249 SMART PHD_3 194 242 IPR001965 -
Pste2g01306 249 FunFam PHD finger alfin-like protein 187 243 - -
Pste2g01306 249 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pste2g01306 249 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Pste2g01306 249 MobiDBLite consensus disorder prediction 144 188 - -
Pste2g01306 249 CDD PHD_AL_plant 194 244 IPR044104 -
Pste2g01306 249 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Pste2g01306 249 SUPERFAMILY FYVE/PHD zinc finger 184 244 IPR011011 -
Pste2g01306 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01306 Pste-Chr2 14367024 14371813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01306 1 248 Alfin-like Transcription Factor Family AT3G42790 76.494 3.64e-123 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pste2g01306 Alfin 7.1e-70 No_clan