Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01305 ATGGATGTGCTATTCCTTACCTCACTTTACCCTTATGTCTGTCTAATATGTTACTTGCTCACAGGTCATGAACTAATAATTTTAGGTGATGACTTTGTTATTGAAGATTACATGAAGCCCTTTCACTTTTTGAATCTTCCTGACAACGAGTTCAATTCTTCTCAAGTTGATTATAATCACCCAATGGCTCATTCTTCTTATCCTTACGGCGAACCAATGTTTGGTTATGAACCACAGGCTATTAGTCAACCGCAAGTGTTACCCTTACCCCAGATGCTTGGAATAACTTCCACCAGAGTGGCATTACCATTCGATATTGCAGAAGATGGACCAATTTATGTCAATGCTAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCTAAGCTTGAGGCTCAGAACAAACTTATCAAAAGTCGCAAGCCATATCTTCATGAGTCTCGGCACCGCCATGCCCTGAATAGGGTTAGAGGATCCGGAGGACGATTCCTCAGCACCAAACAGATGGCACAGTCTAATGCAGAATTTGTTGCTGGTGCACATTCTGGTTCTAACCCTGCCAATATATATAAAACTGAACAGTACTCTTTAGAGATGGAGAGTCATTCCTCAATAGCAGGAGACAATCCATCTGCCATCTCAACCTACTCTGACCGGCCTTGTATACCGGGTAACAATTTCAATTTTAGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTGCAAACATGGGTGGAGCACCCCAGTGCAGTGGGGGACTCACCTTCAGTGGAACAAAACATCTTGCATCAGTTGTCCGGTGAGAGAAGTAGCTATCAAAACCGATTTCCTAGCTAGTCAGGCAAATCATCCTTGGCTTAGTGTCACTTTTGTTTCTGTGTCATAATGTGTTGTTTCTAAATGTTCATCTGGGAGACTTTTCAGTTTGCACTAGCACTTTAAGACCTTTCCTATTGCTTTGGCATGTATTTTAGAGCTGCTATTGCTGATGGATTTTGAACTGGCTTGGAACAGTCTTTGTATGAATAGTTGTATGTTTGTGTGATCCATTATCCATATTTTCTTACTGTGAATGTATTTGGTTAAATAATGCGAGGTCCAAACTTCGAAGC 1116 0.4176 MDVLFLTSLYPYVCLICYLLTGHELIILGDDFVIEDYMKPFHFLNLPDNEFNSSQVDYNHPMAHSSYPYGEPMFGYEPQAISQPQVLPLPQMLGITSTRVALPFDIAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQMAQSNAEFVAGAHSGSNPANIYKTEQYSLEMESHSSIAGDNPSAISTYSDRPCIPGNNFNFRQQECMFLGNSANMGGAPQCSGGLTFSGTKHLASVVR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01305 268 ProSitePatterns NF-YA/HAP2 subunit signature. 113 133 IPR018362 GO:0003677|GO:0016602
Pste2g01305 268 PRINTS CCAAT-binding transcription factor subunit B signature 142 165 IPR001289 GO:0003700|GO:0006355
Pste2g01305 268 PRINTS CCAAT-binding transcription factor subunit B signature 111 133 IPR001289 GO:0003700|GO:0006355
Pste2g01305 268 ProSiteProfiles NF-YA/HAP2 family profile. 108 168 IPR001289 GO:0003700|GO:0006355
Pste2g01305 268 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 47 214 IPR001289 GO:0003700|GO:0006355
Pste2g01305 268 Gene3D - 108 170 - -
Pste2g01305 268 SMART cbf3 107 168 IPR001289 GO:0003700|GO:0006355
Pste2g01305 268 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 111 165 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01305 Pste-Chr2 14358328 14359869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01305 34 175 CCAAT-HAP2 Transcription Factor Family AT1G54160 51.701 9.37e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pste2g01305 CBFB_NFYA 4e-27 No_clan