LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01294	ATGGAAGAAGAAAGAGGTGTGGCAGACAAGAACGTGACAGAGAACGAGGTTGTTCTAAGAATTTCAGAAACTGAACAAGCAATGCACGGAAACAAGGAGAAACGAATGGATTTTAGAAGTTCCCCAGTAGTTGAAAGTAGTTCCGTTTCTCCTGAGCACAACACCAAAATAGGGTTCAAAGATTCTCATGATGAACTCACACTGCTTGAGAATGTAAGAAACAAGGATCTAGCTTCTACAGAGTTGGTGACAACTACGAAGAGATTGACGGGTCGATCGGAATTTGCGAAGCCAAAGTCCAGAATGGTGGAACCACCGTGTCCAAAAGATGCTAAATTTGTTCAAGAAAAGGCCCAAAGGCCGAGTTCAAATTCATCTGGGAGGAATTCTCCTAACAAGAAGGTTCCTCAAGCAACTATTGCTACCCCAAGAACCCCCTTGCTTGAGACTCCAAGGGAAGATGATGATGATGATGATGATGATGATGATGAAGTGTACAAGACTGCAAATATTGAAGTGAGCAAGAGATATGGTAAGAAGTGGAGAGTATTGGGTTTTGTTGAATGGTTTGCTTTTGTTTCTCTCATGGGGTTTTTGGTTGCAAGTTTGATAATTCATATGTTGCAACTTCGGGGAATTTGGGCTTTGGAACTGTGGAAATGGTGTGTGTTGGTATTGGTTATACTTTGTGGAAGACTCGTCACTCAGTGGTTTATCAATGTTTTGGTTTTCTTGATTGAGAGGAACTTCTTGTTTAAGAAAAAGCTTTTGTATTTTGTGTATGGTGTGCGCAAGAGTATTCAGGGATTTATATGGCTAAGTTTGGTTCTTTTGACATGGAGTTTGCTTTTCCACAATGGAGTGAAGAGAAGCACAAAAGTTATCATGATTCTTAATTACATTACTAGGACCATTGCTTCTTGTCTTATAGGATCAGGGATATGGTTAGCCAAAACATTATTGATAAAGCTGTTAGCTTCAAAATTCCAATCCTCTAGATTTTTTGACAGGGTGCAAGAATCACTCTTTCATCATTACATTCTGAGGACTCTTTCTGGTCCTCCCTTGATGGAGATGGCCCAAAAAGTAGGCAAGAGTTGGAGTACTGGCCAACTCAATTTTAAGACTGTGAGAAATGATAACAAAGGGCAGAAAGAACAAGTCATTGATGTAGACAAGCTCAAGAAAATGAAACATGGGAAAGTTTCGGCTTGGACTATGAAAGGGTTGGTTAATGTGATAAGGAGTTCTGGGTTGTCTACCATCTCCTATACACAAGATAGTATTTATGAACATGAAAGTGACCATAAAGATGATGAAATTACTAGCGAGTGGGAAGCAAAGGCAGCTGCTTATAGAATTTTCAGGAATGTAGCCAAGCCAGGAAACAAGTATATTGAGGAGGATGACCTCTTGCGATTCATGAAAAATGGAGAGGTTGAAAATGTACTGCCACTATTTGAAGGGGCGGTTGAGATTGGAAGAATTAAGAGGAAGTCTCTGAAGAACTGGTTGGTGAAAGTTTACCTTGAACGCCGATCACTTGTACATTCACTAAATGATACCAAAACAGCCGTTAATGACTTGAATATGCTTGTTTCTGCAATTGTGATTATTTTGATCATTGTTGTGTGGCTTCTTATGATGGGTTTCTTAACAACTCAAGTTCTTGTCTTTATTTCATCCCAGCTTTTACTTGTGGTTTTCATGTTTGGCAACACAGCTAAAACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCACCCATTTGATGTCGGTGATCGCTGCGTCATTGATGGTGTTCAGATGGTTGTGGAAGAGATGAACATACTAACTACTATCTTTTTGAGATATGACAATGAAAAAATTTTCTATCCAAATTCAGTTCTGTCAAACAAGCCAATCAGTAACTTCTACAGGAGTCCAGAAATGAATGAATCAGTTGAATTTGCTGTTGATGTTTCTACTTCTATTGAAAGTATTGGAGCTTTAAAGGCGAAGCTAAAAGCATATTTGGAGAGTAGGCCTCGACATTGGCGTCCCAACCACAACGTAGTGGTTAAGGATATCGAGAATGTAAATAAGATGAAAATGTGTCTAAATGTTACTCACACCATAAATTTTCAGCATTATGGGGATAAGACCAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAATATTAAATATCATCTGCTGCCACAGGAAGTTCATCTCAGTTATGTAAGGCCAGAAAACTCATCAGCAGTAAAATTGTGAAGACAGCTTTCATAATTGATGCATCCTTTCACATGGTGCAAGTCTGTAGCACATTTTTTTGGTGCTACTATTTTGATTCTAGACTAATGTTTCCCCCCAGGCCTCATCTGTATTCAGTTTGACATCAAACATGGTGTG	2418	0.3879	MEEERGVADKNVTENEVVLRISETEQAMHGNKEKRMDFRSSPVVESSSVSPEHNTKIGFKDSHDELTLLENVRNKDLASTELVTTTKRLTGRSEFAKPKSRMVEPPCPKDAKFVQEKAQRPSSNSSGRNSPNKKVPQATIATPRTPLLETPREDDDDDDDDDDEVYKTANIEVSKRYGKKWRVLGFVEWFAFVSLMGFLVASLIIHMLQLRGIWALELWKWCVLVLVILCGRLVTQWFINVLVFLIERNFLFKKKLLYFVYGVRKSIQGFIWLSLVLLTWSLLFHNGVKRSTKVIMILNYITRTIASCLIGSGIWLAKTLLIKLLASKFQSSRFFDRVQESLFHHYILRTLSGPPLMEMAQKVGKSWSTGQLNFKTVRNDNKGQKEQVIDVDKLKKMKHGKVSAWTMKGLVNVIRSSGLSTISYTQDSIYEHESDHKDDEITSEWEAKAAAYRIFRNVAKPGNKYIEEDDLLRFMKNGEVENVLPLFEGAVEIGRIKRKSLKNWLVKVYLERRSLVHSLNDTKTAVNDLNMLVSAIVIILIIVVWLLMMGFLTTQVLVFISSQLLLVVFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLSNKPISNFYRSPEMNESVEFAVDVSTSIESIGALKAKLKAYLESRPRHWRPNHNVVVKDIENVNKMKMCLNVTHTINFQHYGDKTSRRSELVLELKKILEDLNIKYHLLPQEVHLSYVRPENSSAVKL	759

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	92	116	-	-
	Pste2g01294	759	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	10	755	IPR016688	-
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	117	139	-	-
	Pste2g01294	759	Pfam	Mechanosensitive ion channel	532	736	IPR006685	GO:0016020\|GO:0055085
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	89	163	-	-
	Pste2g01294	759	FunFam	Predicted mechanosensitive ion channel	590	639	-	-
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	41	55	-	-
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	23	64	-	-
	Pste2g01294	759	Gene3D	-	590	639	IPR023408	-
	Pste2g01294	759	PIRSF	Memb_At2g17000	2	758	IPR016688	-
	Pste2g01294	759	MobiDBLite	consensus disorder prediction	26	40	-	-
	Pste2g01294	759	SUPERFAMILY	Sm-like ribonucleoproteins	580	639	IPR010920	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01294	Pste-Chr2	14239018	14243463	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01294	42	747	Mechanosensitive Ion Channel Family	AT5G12080	49.446	0.0	701