Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01288 AAATTTATGATATGTTTACCGGTTCAGCAAACGGCAAACGCGAATCCTCAATCAGAGGGAGGATGTCGATAAATCTCACAGCAAACGCGATTCCGGCGATAATCAACGGCGACGTAAACGCGAAACCGCTGGTTCAGGTTCTGGACGTGGCGTTAGTCCCCAACAGCAATAATTCGCAGCAGCAGAAGCGATACCGCGTTTTACTCTCCGACGCCGTTTTGTCTCACGACGCCATGCTCGCCACTCAACTTAACGACCGAATCACAACCGGACAAATTCAGAAGGGTTCCGTTGTTCAGCTTCTCGATTACATTTGCAGTCCTATCAAGAATCGCAAGATTATTGTGATTCTAAACATGGAAACTATATTACGTGATTGTGAGATCATTGGGAATCCAAAGCCATATATGAACTCTGCTTTACCAACTGTAAGTGCTTTAGCTGATAACACTGGGGGGAATTTGTCCAGGAGTAATACTAATTCTACATCTACTGTTCAAAATACAAGTCAAAGTAACACACAGAACTTTAGGCCAACAATTCAACCGGCATACCAACCACCTCCGGTTTACAAAGGCCGAGGAGCAATTTTGAAAAATGAGGCACCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATTAAGGCAAGGGTAACTGCTAAAGGGGATGTGCGCCGCTATAATAATGCCCGCGGTGATGGAAAAGTCTTTTCATTTGATCTCCTTGATTCTGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTATTGTTGATCGCTTCTATATCGTAATTGAGGTTGGTAAAGTTTACATGATATCCAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTCTGGAATCAACTTCAACAGTTGAGCTTTGCCCAGATGAAGATGATTCCATACCTAGACAACAGTTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTTGACAATAATTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCCGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATCTTGAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGTGAATTCTGCAACAGGGAAGGACAGAAACTGCAAGAGATGGTGGATGCTGGGTTTTTCCCAATTTTGGCACTCAAAGCTGGGAAGCTGAATGACTTCAATGGAAAGTCTATAGGTTCTATTTCTACCACACAGCTTTTCATAAATCCTGATTTCCCTGAGGCTCATAGCTTAAGAGAATGGTTTGATCGAGAAGGAAAATATTCTGCTTCCTTATCCATTTCTAAGGATAATATTCCTGGAGGAGTGAAGAATGAGGTACGCAAAACTGTGTCTCAAATCAAGGATGAAGGTTTGGGGCGTTCAGATAAGCCAGATTGGATTACCTTGAGGGCAACCATATCATTCATCAAGACTGATACATTTTGTTACACAGCATGTCCTCTGATGATCGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTCAGGAAATGCAAGATGGCAATGTGATAGATGTAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCTTGATGGCACAGGATTAACATGGGTAACTGCATTCCAAGAAGCAGGTGAAGAGATTATGGAGTACACAGCAAAGGATTTGTACTTATTGAAACATGAACAGCAGGATGATGAGACATTTGGAGAAATTATCAAGAGCCGACTTTTCAACGAGTTTATGTTTAAGCTTAAGATCAAAGAGGAATTATATGGCGATGAACAGAAGGTGAAGATTACTGTAATCAAGGTAGACAAGGTTAACTATTCTTCAGAAAGTAGATACATGCTTGATTCAATTTCCAAGTTTTGTAGGCAGTAATTGTAGCTTGGTTTCAACTTTTAGTATGACGAGCCATACCTATTTGTATTAGAATTCAAACTTTACATAGAATTGGTCATTACTCGTTAGTGACTATGAGTTACTGTCATTTGTATGCTCATTACGAAACAAATATTTAGATAGTATCAATTCAAGTTTGAATTTTCTATCTCTCGTGTATATGACCTTTATATCTGATTCATATGAATTTGCTGTTAGCTATATTTATACTTCAAAATATAATCTATCATTGCT 2213 0.4013 MFTGSANGKRESSIRGRMSINLTANAIPAIINGDVNAKPLVQVLDVALVPNSNNSQQQKRYRVLLSDAVLSHDAMLATQLNDRITTGQIQKGSVVQLLDYICSPIKNRKIIVILNMETILRDCEIIGNPKPYMNSALPTVSALADNTGGNLSRSNTNSTSTVQNTSQSNTQNFRPTIQPAYQPPPVYKGRGAILKNEAPARIIPIAALNPYQGRWAIKARVTAKGDVRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYIVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRPISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQKLQEMVDAGFFPILALKAGKLNDFNGKSIGSISTTQLFINPDFPEAHSLREWFDREGKYSASLSISKDNIPGGVKNEVRKTVSQIKDEGLGRSDKPDWITLRATISFIKTDTFCYTACPLMIGDRQCNKKVTRSGNARWQCDRCNQEFEECDYRYLLQAQILDGTGLTWVTAFQEAGEEIMEYTAKDLYLLKHEQQDDETFGEIIKSRLFNEFMFKLKIKEELYGDEQKVKITVIKVDKVNYSSESRYMLDSISKFCRQ 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01288 648 Pfam Replication factor-A C terminal domain 487 637 IPR013955 -
Pste2g01288 648 SUPERFAMILY Nucleic acid-binding proteins 18 128 IPR012340 -
Pste2g01288 648 CDD RPA1N 26 119 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pste2g01288 648 NCBIfam replication factor-a protein 1 (rpa1) 21 644 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste2g01288 648 Gene3D - 201 311 IPR012340 -
Pste2g01288 648 MobiDBLite consensus disorder prediction 147 181 - -
Pste2g01288 648 Pfam Replication protein A OB domain 325 429 IPR031657 -
Pste2g01288 648 CDD RPA1_DBD_A 204 307 - -
Pste2g01288 648 Gene3D - 454 646 IPR012340 -
Pste2g01288 648 MobiDBLite consensus disorder prediction 147 177 - -
Pste2g01288 648 PANTHER REPLICATION FACTOR A 1, RFA1 215 622 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste2g01288 648 SUPERFAMILY Nucleic acid-binding proteins 468 645 IPR012340 -
Pste2g01288 648 Gene3D - 21 133 IPR012340 -
Pste2g01288 648 FunFam Replication protein A subunit 21 133 - -
Pste2g01288 648 Pfam Replication factor-A protein 1, N-terminal domain 22 119 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pste2g01288 648 FunFam Replication protein A subunit 314 453 - -
Pste2g01288 648 Pfam OB-fold nucleic acid binding domain 216 299 IPR004365 GO:0003676
Pste2g01288 648 Gene3D - 314 452 IPR012340 -
Pste2g01288 648 SUPERFAMILY Nucleic acid-binding proteins 319 448 IPR012340 -
Pste2g01288 648 CDD RPA1_DBD_C 471 644 IPR047192 -
Pste2g01288 648 FunFam Replication protein A subunit 201 310 - -
Pste2g01288 648 FunFam Replication protein A subunit 454 645 - -
Pste2g01288 648 SUPERFAMILY Nucleic acid-binding proteins 201 315 IPR012340 -
Pste2g01288 648 CDD RPA1_DBD_B 336 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01288 Pste-Chr2 14191592 14194827 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01288 43 640 Core DNA Replication Machinery Family AT2G06510 69.657 0.0 889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01288 2 14191592 14194827 Pste2g01288 2 14191592 14194827 ECH