Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01248 ATGATTCCAAACGTTCAAATCCCTCACTGGGACGGCGAAGGGGGAGCACTGTCGCCGTTCTATCCTACCGACGCACCCTCATTCTGCTCCGATGATTTCCGAATGTATCAGTTCAAGGTCCGCAACTGTCCACGTGGCAGGTCCCATGACTGGACGGAGTGTCCCTACGCCCACCCCGGCGAGAAGGCCCGCCGCCGTGACCAGCGCAAGTACCTCTACTCCGCCACGCCCTGCCCCGATTACCGGAAGGGCAACTGCAAGAGGGGTGACACGTGTCAATTCGCGCATGGCGTCTTCGAATGCTGGCTCCACCCCTCGCGCTATCGCACCCAGCTCTGCAAAGACGGAACCGGTTGCCGCCGCAGAGTCTGCTTCTTCGCCCACACCAACGACCAACTCCGCCTCCCAACGGAATCATCGCCGTCGCCGTCCTTTGTTTCCTCTCCCACTTCGGTTATCAACTCTCTGTTTTCCGATTCGCCACCTTCTTCGCCGTACGGTGTCGTACAGGATGTGCGGGAGATAGTTAACTCAATGCGGAATGTTCAACTGGAGGGTTTGACCCGTTCCGTGTTTGGGTCGCCACGTGGCGGGTTTTTAAGCGTGACTGGATGTGAAGAAGAGCCTGCTATGGAGAGAGTGGAATCGGGGAGGGATATTAGAGCCAGAATCTACGCCAAGCTTAGTAGGGAGAATTCCATTGGCGCATCTTCCCCTGACATTGCATGGGTTTCGGAACTCGTCAACTGA 750 0.5707 MIPNVQIPHWDGEGGALSPFYPTDAPSFCSDDFRMYQFKVRNCPRGRSHDWTECPYAHPGEKARRRDQRKYLYSATPCPDYRKGNCKRGDTCQFAHGVFECWLHPSRYRTQLCKDGTGCRRRVCFFAHTNDQLRLPTESSPSPSFVSSPTSVINSLFSDSPPSSPYGVVQDVREIVNSMRNVQLEGLTRSVFGSPRGGFLSVTGCEEEPAMERVESGRDIRARIYAKLSRENSIGASSPDIAWVSELVN 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01248 249 Gene3D - 72 135 - -
Pste2g01248 249 SMART c3hfinal6 72 98 IPR000571 GO:0046872
Pste2g01248 249 SMART c3hfinal6 107 130 IPR000571 GO:0046872
Pste2g01248 249 SUPERFAMILY CCCH zinc finger 71 101 IPR036855 GO:0046872
Pste2g01248 249 ProSiteProfiles Zinc finger C3H1-type profile. 72 99 IPR000571 GO:0046872
Pste2g01248 249 PANTHER UNKEMPT FAMILY MEMBER 25 248 IPR045234 -
Pste2g01248 249 FunFam Zinc finger CCCH domain-containing protein 66 29 98 - -
Pste2g01248 249 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 76 97 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01248 Pste-Chr2 13798125 13798874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01248 28 167 C2H2 Transcription Factor Family AT5G12850 57.862 1.49e-56 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste2g01248 zf-CCCH 3.6e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01248 2 13798125 13798874 Pste2g01248 2 13798125 13798874 ECH