Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01239 GCCGGATTGAATTGCACCACTCCGCTCTCTCTCTCTTCTGTTCCTCGCCTCCTGTACAATCATGTATCCAAGTCCAAGGGCAAGTTTGTTGTACTCTTTAGCTTGTGATTCAAGATTAGGAAACCGCCACAACCAGGTTCCATTTAACACGTTCCATCTTCAATCGGGTGGATCTGATCAGTGTTTTCAACCCGATCAAGTACCAATGGAAAACCAGTCCAACAACTCTCCTATTTTCCATTATCCTATAATGCGATCAAATCTTCACCACACGCTGCATCCTCACTCTCAGCAAGGAGGGAGTCAGAGCTCTAACGAACTTGAAGCCATAAAAGCCAAAATCGTTGCCCATCCTCTCTACTCCAATCTTGTACAACTTTACATGGATTGCCAAAAGGTAGGGGCTCCGCCAGAAGTTGTGGCGCGTTTGGCTGCGGTTCGGCAGGATTTTGAGGCTCCACAGAGATCTTTGGTTAGGTCAAGGGAAAGTTGCAAGGACCCAGAACTTGATCAATTCATGGAAGCTTACTATGACATGGTTGTGAAGTATAGAGAGGAATTAACGAGGCCTATAAAAGAGGCTATGGATTTCATGCGGAGGATAGAAACTGAACTGAACACGCTTTGCAATGGAACCGTGCGGATCTTCTCGGATGATAAGAGTGAAAACATGGGTTCATGCGAAGAGGATAAAGACAACAGTGGTGGAGAAACAGAACTGAGGGAGATTGATCCCCAAGCAGAAGACCGTGAAATCAAAAGCCTTTTGCTGAGGAAGTACAGTGGTTACTTAAGTAGCCTTAAGCAAAAACTTTCAAAGAAAAAGAAAAAAGGAAAGTTGCCTAAAGGTGCTAGGCAAAAGCTCCTTAGCTGGTGGGAATTGCATTTAAAATGGCCATATCCATCGGAATCAGAGAAGGTGGCACTGGCTGAAGCTACTGGTTTGGACCAGAAGCAAATAAATTACTGGTTCATAAATCAAAGGAAGCGCCACTGGAAACCATCGGAAGATATGCAATTTATGGTTATGGATGGCCAGCCTGCATACGCAGAACTCTTCTCTCTATATCAATGCCCACTACTTGCCTCATGCCCATTACCGTTTAGCGCCATAACCACCCATAAGCATTTAGCTACTATT 1141 0.447 MYPSPRASLLYSLACDSRLGNRHNQVPFNTFHLQSGGSDQCFQPDQVPMENQSNNSPIFHYPIMRSNLHHTLHPHSQQGGSQSSNELEAIKAKIVAHPLYSNLVQLYMDCQKVGAPPEVVARLAAVRQDFEAPQRSLVRSRESCKDPELDQFMEAYYDMVVKYREELTRPIKEAMDFMRRIETELNTLCNGTVRIFSDDKSENMGSCEEDKDNSGGETELREIDPQAEDREIKSLLLRKYSGYLSSLKQKLSKKKKKGKLPKGARQKLLSWWELHLKWPYPSESEKVALAEATGLDQKQINYWFINQRKRHWKPSEDMQFMVMDGQPAYAELFSLYQCPLLASCPLPFSAITTHKHLATI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01239 360 MobiDBLite consensus disorder prediction 200 225 - -
Pste2g01239 360 SUPERFAMILY Homeodomain-like 252 327 IPR009057 -
Pste2g01239 360 ProSiteProfiles 'Homeobox' domain profile. 251 314 IPR001356 GO:0003677
Pste2g01239 360 Pfam KNOX2 domain 144 189 IPR005541 GO:0003677|GO:0005634
Pste2g01239 360 CDD homeodomain 265 315 IPR001356 GO:0003677
Pste2g01239 360 Pfam Homeobox KN domain 271 310 IPR008422 GO:0003677|GO:0006355
Pste2g01239 360 SMART KNOX2_2 139 190 IPR005541 GO:0003677|GO:0005634
Pste2g01239 360 Gene3D - 256 318 - -
Pste2g01239 360 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 321 - -
Pste2g01239 360 MobiDBLite consensus disorder prediction 201 225 - -
Pste2g01239 360 SMART KNOX1_2 88 132 IPR005540 GO:0003677|GO:0005634
Pste2g01239 360 Pfam KNOX1 domain 89 130 IPR005540 GO:0003677|GO:0005634
Pste2g01239 360 SMART ELK_2 231 252 IPR005539 GO:0003677
Pste2g01239 360 SMART HOX_1 253 318 IPR001356 GO:0003677
Pste2g01239 360 Pfam ELK domain 231 249 IPR005539 GO:0003677
Pste2g01239 360 ProSiteProfiles ELK domain profile. 231 251 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01239 Pste-Chr2 13720652 13724730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01239 38 333 Homeobox Transcription Factor Family AT4G08150 63.226 2.75e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste2g01239 KNOX2 3.4e-23 No_clan