Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01237 AGCACCGAGAAAGGGAGCACAGGGCCGAGAACGCCGAAAGTGTGATGAGCAGTGGGAGCCAAGAGCCGAAAGAAAGCGATAGACTGCAGGGTCGAGAGTGCCGAGCAGTGATAGCCAAAGGGGCAGAGCCGCAAGTGATAGAGCGCCGAGAAGGCGATGGATTGCCAAGCAAGCGATGGTGTGCAGAGAAGGTGATGGTGGGCCGAAATATCATGGGCTTTGATATCGATATCTCTGTCTCAGGGCCTGGACTTGATCTTGGTCTTGGCCTTGGCCTCCATGAAGATGAGTCATCAGAAAGTTGCACGAAGAGCAATGAACAAAGCCAGAAGAAAAAGGAAGCGGATCCGTGTAACAAGGCTTACCCATCACTTACTTTAGGACCACCCGATGATGAAGCAAATAATAATCAACAAATTACCAAAACTGAATCCGATGAATATTGTTATTTTTCTCCAAGTGCAGTGTCTTCGTTTTCCAACTCATCTAGCATCGTAAAGAGCGAGAGAGATAGAGATCAGTTGGCAGGGGAAGAACTTGAGTTGGAGGTAGAGAAGATTCCGTTAAGGGTTGTCGATGTTGCTGAAAATGGTTACCCCAAGAAGAAACTCAGGCTCACCAAACAACAATCTGTAGTCTTGGAAGACAGTTTCAAAGACCATTCTACTCTCACTACGAAACAGAAGCAAGAATTGGCAAAGAAACTGAATCTGCGGACTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGAGCCAGGACAAAACTGAAACAAACTGAAGTGGAGTGTGAGTTAATGAAAAAGTGTTGTGAAAGTCTAAGAGAAGAGAACAAAATGCTGCAAAAAGAGTTAGAAGAGCTGAAGTGGATGAAAACAACGGTGGGACCCTTTTATATGGAACTTCCAGTGACAAGGGTTACAATATGCCCTTCTTGTGAGAGAATTTGCGGTGGCAACAGCACAGGCAACAACGGTTCCTCTTCCAAAACGACTTTGGTTGTTGGCCCAAAGGCCCATCATGATCAACACTTGTACAAAAATACCTATACATTCACCCAATCATCCGCAGCTTGCTAGCTACTTAGGCCAATACAACTTCATAATTTCCAGGCAATAATTTTTTATGCTGTTAACTACTGTATCAAGGATATTAATTAATTAAGCATTCAATAAACAAAACTTTTTTT 1186 0.4393 MSSGSQEPKESDRLQGRECRAVIAKGAEPQVIERREGDGLPSKRWCAEKVMVGRNIMGFDIDISVSGPGLDLGLGLGLHEDESSESCTKSNEQSQKKKEADPCNKAYPSLTLGPPDDEANNNQQITKTESDEYCYFSPSAVSSFSNSSSIVKSERDRDQLAGEELELEVEKIPLRVVDVAENGYPKKKLRLTKQQSVVLEDSFKDHSTLTTKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVECELMKKCCESLREENKMLQKELEELKWMKTTVGPFYMELPVTRVTICPSCERICGGNSTGNNGSSSKTTLVVGPKAHHDQHLYKNTYTFTQSSAAC 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01237 343 ProSitePatterns 'Homeobox' domain signature. 217 240 IPR017970 GO:0000981|GO:0006355
Pste2g01237 343 SUPERFAMILY Homeodomain-like 185 250 IPR009057 -
Pste2g01237 343 SMART HOX_1 185 246 IPR001356 GO:0003677
Pste2g01237 343 Coils Coil 241 275 - -
Pste2g01237 343 SMART halz 242 286 IPR003106 GO:0006355|GO:0043565
Pste2g01237 343 MobiDBLite consensus disorder prediction 82 103 - -
Pste2g01237 343 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 74 315 - -
Pste2g01237 343 Gene3D - 180 247 - -
Pste2g01237 343 Pfam Homeodomain 186 240 IPR001356 GO:0003677
Pste2g01237 343 CDD homeodomain 185 243 IPR001356 GO:0003677
Pste2g01237 343 Pfam Homeobox associated leucine zipper 242 275 IPR003106 GO:0006355|GO:0043565
Pste2g01237 343 ProSiteProfiles 'Homeobox' domain profile. 182 242 IPR001356 GO:0003677
Pste2g01237 343 MobiDBLite consensus disorder prediction 76 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01237 Pste-Chr2 13697520 13704384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01237 57 343 Homeobox Transcription Factor Family AT2G22800 44.262 3.19e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste2g01237 Homeodomain 8.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01237 2 13697520 13704384 Pste2g01237 2 13697520 13704384 ECH