Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01222 ATGCTGCTTCTGCTGATGAGTTTTTGGCTTCTTGGACACCCTCAGCTTCATTTGTTTTCAGCTGCAAGACAACAATTTGTGGCATTTCTAGGAAAAGGGGTGAGCTTTTTGTTGATTCTGCTCGATGTTATCGAGCAACTTTCGGTTAGAGGTGATAGGGGGTTCTGCATCTTCTTGTTTGTTTCTGGGGAAGTGGTGCTGCTGTTTTTGGAGTATGACTTGGAGTTAGAATTGTTATTATTGTGGAAGACTAGGGGAACAAGGTTAAATCTTGTTGCAAGAAGAAGAGTTTTGAACTTTTTTGGGGTCATCACTTTTATAAGTGGGGAAAGGAAGGCCATCAATTCAGAGTTATGGCATGCTTGCGCTGGACCATTGGTTTCTTTACCTCCTGTCGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCTATGCAAAAGGAGGCTGACTTCATACCCAGTTACCCTAACCTTCCTTCCAAGTTGATTTGTATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACCGATGAGGTCTATGCACAGATGACCCTTCAACCAGTAAATAAATATGACAAGGAAGCAATATTGGCATCAGACATGGGTCTCAAACAAAACCAACAACCTACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACAAGCACTCACGGTGGATTTTCTGTGCCTCGTAGAGCAGCTGAGAAAATATTCCCCCCTCTGGATTTTTCAATGCAACCTCCAGCTCAGGAGATTGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTACCGCGGACAACCGAAGAGGCATCTATTGACGACTGGTTGGAGTGTCTTTGTTAGCACAAAAAGGCTATTCGCCGGAGATTCGGTTCTTTTTATTAGAGATGAAAAACAACAACTTCTTTTAGGTATAAAGAGGGCTAATAGACAGCAGCCAGCACTATCTTCTTCAGTAATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCAGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGGCCAGCCCCTCAGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCCTTGTACAATCAAGTTTCACTTGGAATGAGATTCAGAATGATGTTTGAGACTGAGGAGTCAGGGGTACGCAGATATATGGGTACAATCACTGGGATCAGTGACTTGGATCCTGTTAGATGGAAGAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACGGCTGGTGAGCGCCCGAGCAGAGTTTCAATTTGGGATATTGAACCAGTAGTGACTCCTTTCTACATTTGTCCTCCTCCATTTTTTAGGCCAAAGTTCCCCAAGCAGCCAGGAATGCCAGATGATGAGTCTGATATAGAAAATGCTTTCAAGAGAGCTATGCCCTGGCTTGGTGATGACCTTGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTGGTGCAATGGATGAGCATGCAGCAGAATAATCAGTTCTCTGCTGCCCAACCTGGATTTATGCCTCCATCCATGCTTTCACCTAATACACTGCATAGTAACCTTACCACTGATGATCCATCCAAATTATTGAGCTTCCAAGCTCCTGTCCTCTCTGCATCAAATCTTCAATTTAACAAACCTAATTTACCAAACCAAGTTAACCAATTGCAACAATCCCCAACATCATGGCCTCCACAGCAGCAACAACCACAGAAGATGCAGTCGTTGTTGCAAACACCCGCAAACCCACTCCAGCAGCAGCAACAGAGGCAACAGCAGCTGCCTGTACCTCAAAACCTGTCACAACCACAACAGCAACAGCCCCAAATGCCTCAACAGAGAGCGCAACAATCACAACAACAGCAACAACAGTCGTGTCAACAGACCATAATGAATAACGCGCCTGTTGTTTCTAACCAGATTCCAAATCAGTGTGTACAGCAACCAGTAACATACTCCCAGCTTCAGCAACAACAATTACTCTCAGGAAGTATCCCACCCCCACAAAATTTTCAATCACCCAATAAGAATACATTGCTGATGACATCCTTGCCACAAGAATCACAGTTTCAGCACCAAATTGACCAGCAAACTAGTCTCTTACAGAGGCAGCAGCAGCAACAGCAACAGACACAGTTACAATCATCTCCATTGCATTTATTGCAGCATAGCCTGTCACAGAGGACTCAACAGCAGCCACAAATGTCTCAAGTGTTGCAGCAAAACAGCTCAGAGCAACAACCACAGTTGCAATTGCTGCAGAAATTGCAGCAACAGCAACAACAGCAACAACAGCAGCAGCAGCAGCAACTCCTTTCCACTTCTGGCCCACTTTTGCAGTCTCAGCTTCTACAGCAACCTCATCAACAAAACCAGCAACTATCACAGATGCCTCTATCACAGTGTCATCAGCCTCAACAGCTTGGCAACAATGCTTTCTCAATGGAGAAGCTTTTCAATGGAAACAACTACTCTTCTTCAGCTTTGATGCAAACACAGCAGCTTCCTGTGAACCAACCCCATAATACACAGAAGTCATTAACTACTACTAGAGCTCCCTCTACCCTTACTGATGGAGATGCCCCATCATGCTCAACTTCACCATCTACTAATAATTGCCAGATATCTCCTCCAAATCTGATGAAAAGAAATCAACAAGTACCAGCCACATTAGGAGGACCTTCAGTAGTTGAACCCATCAATCATATGATACAGGAGCTTCATAGCAAGTCTGAGATGCAGATCAAACACGAGTTACCCAGTGTAAGAGGACCTGACCAGCTGAAGTACAAAGGGACAATTGCTGATCAGATGGAAGCTTCTTCTGGAACATCATATTGTATTGATCCTAATAATATCCACCAGAACTTCCCACTTCCCAACTTCTGCATGGATGGGGATGTTCAATCACATCCAAGAAATAATCTTCCCTTTGCCTCTAATCTTGATGGATTAACACCTGATACTTTGCTCTCAAGAGGGTATGATTCTCAGAAAGATCTTCAAAACTTACTGTCCAATTATGGTGGTGCTCCAAGAGACATTGAAACTGAGCTGTCCACTGCTGCCATTAGTTCGCAGCCATTTGGGGTGCCAGACATGCCTTTTAAGCCTGGCTGCTCCAGTGATATTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGACTAATCAGGCTCAGAGAATGCGAACTTATACTAAGGTTCAAAAATGTGGCTCTGTTGGAAGATGTATTGATGTCAACCGTTACAAGGGATATGATGAACTCCGACATGATTTGGCTCGGATGTTTGGAATTGAAGGGCAGCTAGAGGATCCACAAAGGACTGAGTGGAAACTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGAAGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCTGAGGTACAGCAAATGAGTTTGGATGGGGATTTAGGTCATGTTCCAGTGCCCAATCAAGCTTGTAGTGGGACAGATAATGGCAATGCATGGAGGGGGCACGAGAGAATTAGATCCCTAGATGTACCAAGACCAGATTCCTTTACTAAAATGATGCAGATTCTATCTTGGAATCTGCTCTTCTTGTGGCTGATAGTGCATGTTTAG 3717 0.4372 MLLLLMSFWLLGHPQLHLFSAARQQFVAFLGKGVSFLLILLDVIEQLSVRGDRGFCIFLFVSGEVVLLFLEYDLELELLLLWKTRGTRLNLVARRRVLNFFGVITFISGERKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRANRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRASPSEFVIPLAKYNKALYNQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWLGDDLGMKDASSSIFPGLSLVQWMSMQQNNQFSAAQPGFMPPSMLSPNTLHSNLTTDDPSKLLSFQAPVLSASNLQFNKPNLPNQVNQLQQSPTSWPPQQQQPQKMQSLLQTPANPLQQQQQRQQQLPVPQNLSQPQQQQPQMPQQRAQQSQQQQQQSCQQTIMNNAPVVSNQIPNQCVQQPVTYSQLQQQQLLSGSIPPPQNFQSPNKNTLLMTSLPQESQFQHQIDQQTSLLQRQQQQQQQTQLQSSPLHLLQHSLSQRTQQQPQMSQVLQQNSSEQQPQLQLLQKLQQQQQQQQQQQQQQLLSTSGPLLQSQLLQQPHQQNQQLSQMPLSQCHQPQQLGNNAFSMEKLFNGNNYSSSALMQTQQLPVNQPHNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQISPPNLMKRNQQVPATLGGPSVVEPINHMIQELHSKSEMQIKHELPSVRGPDQLKYKGTIADQMEASSGTSYCIDPNNIHQNFPLPNFCMDGDVQSHPRNNLPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQPFGVPDMPFKPGCSSDIAINDTGVLNNGLWTNQAQRMRTYTKVQKCGSVGRCIDVNRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGHVPVPNQACSGTDNGNAWRGHERIRSLDVPRPDSFTKMMQILSWNLLFLWLIVHV 1238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01222 1238 SUPERFAMILY DNA-binding pseudobarrel domain 210 349 IPR015300 -
Pste2g01222 1238 Gene3D - 217 321 IPR015300 -
Pste2g01222 1238 SMART B3_2 220 322 IPR003340 GO:0003677
Pste2g01222 1238 Gene3D - 1083 1177 - -
Pste2g01222 1238 ProSiteProfiles B3 DNA-binding domain profile. 220 322 IPR003340 GO:0003677
Pste2g01222 1238 MobiDBLite consensus disorder prediction 859 901 - -
Pste2g01222 1238 ProSiteProfiles PB1 domain profile. 1088 1181 IPR000270 GO:0005515
Pste2g01222 1238 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 111 1177 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste2g01222 1238 SUPERFAMILY CAD & PB1 domains 1101 1166 - -
Pste2g01222 1238 MobiDBLite consensus disorder prediction 709 739 - -
Pste2g01222 1238 FunFam Auxin response factor 218 322 - -
Pste2g01222 1238 FunFam Auxin response factor 383 455 - -
Pste2g01222 1238 MobiDBLite consensus disorder prediction 566 649 - -
Pste2g01222 1238 FunFam Auxin response factor 1083 1177 - -
Pste2g01222 1238 MobiDBLite consensus disorder prediction 523 547 - -
Pste2g01222 1238 Gene3D - 383 454 - -
Pste2g01222 1238 MobiDBLite consensus disorder prediction 808 829 - -
Pste2g01222 1238 Pfam B3 DNA binding domain 220 321 IPR003340 GO:0003677
Pste2g01222 1238 Coils Coil 772 793 - -
Pste2g01222 1238 Pfam Auxin response factor 346 428 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste2g01222 1238 Pfam AUX/IAA family 1085 1174 IPR033389 -
Pste2g01222 1238 CDD B3_DNA 219 311 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01222 Pste-Chr2 13436270 13444360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01222 109 582 B3 DNA Binding Superfamily AT1G19220 84.211 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste2g01222 AUX_IAA 1.5e-09 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01222 2 13436270 13444360 Pste2g01222 2 13436270 13444360 ECH
Pste6g03528 6 24210115 24222168 Pste2g01222 2 13436270 13444360 PCT