Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01210 TAGTAATTAGCATAGGAGTGGGAAACTGGAAAGGAAAGAGGGAGAGGGGTTTTTGCTTTTGTGATTGAATTGGGGATTTAGGGATTGTGTACAGTAGCGTAGATGAATTTGAAGATGGATTCTGATAGAGCGAAGCTGTTCGTAGGAGGCATTTCACGCGACACCACCGAAGACGTTCTCAAAGTCCACTTCGCCAAGTACGGCGTCGTTTCGGACTCCACAGTCTCCTTAGACCGCACCACCCGAAGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCCGATCTCTCCGCAGCCGATAAAGCCCTCCAAGACACGCACGTCATTCTGGGAAGAACGGTAGAAGTGAAAAAAGCTATTCCCAGGAGTGAATATCATCAACATCAAAACCAATTTCAAATTAGAGGGGGAGGTAGTTATAATGCTAGTAATGACTGTAGCAGTGACAACAACGTTAGAACTAAAAAGATTTTTGTAGGGGGTTTACCTGCTGGTATATCCGAAGGGGAGTTTAAGAACTACTTTGAGAGGTTTGGTCGAATAACTGACGTTGTGGTGATGCAGGACAGTGTAACTCACCGGCCCAGGGGGTTTGGGTTCATCACTTTTGATTCTGAAGAATCGGTTCAAAATGTTATGGTGAAGAATTTTCATGACTTGAATGGTAGGCAGGTGGAGGTTAAGAGGGCTGTTCCCAAAGAGGGCAACCCTGGCTATGATGGGTTTAGTAAATTAAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAACTTTCCTCCTTATAGTCATAGGAATATGCTACTGGGATTCGCTCCCATGCCTTGGTATAGTGGTGATGGGATATACGCATACGGGTCTAACGGCTATGGTTGCTGGTACCCTATGAGTGGGTATGGGGGGAGTGGATATGTGGTTCCATCTGATGCTTCTAGGAACTTCTGGTATGGGCCAATGATAACTGGTCCTCAGCCATGTCAGGTGCCTTATGCTAGTGCTGTTCCCAATGTTGCATATGTGGGGGGTAGGATTGGAATAGTAGGTAGTGGTGCTGGATCTTTGGGGTACAACGGCATTCTTGGGTCTGCAACAAATTTAAAATTTGATCAACCTTTTAATGCTAATGGATTTGTTCGGGGCAATGTGACATCTCCTCACGGTGTAAAGCAGGATGTTGTTGACTCTTCTAGTTTGAAAGGAAGCAATGGTGAAATTTCAAGTTAACAGACTAAAAGGGCCTTTGGCCGTAATTCATGTAGGTAAATACTTACTGACTTCTTCAGGGCTGTGAAAGGTTTGCATATTCTTTCGCTAGATGTTGTAAGGGGATAAGGACTAGTAACTTGATCTTATATTAGTTTTAATTTGTGAAGATACCTTCTTATGTGTCATAAACATGTAGTTTAGCAACTCGACATGTTTAGTTATGGATTTTTATTAGTAGAGGTTTCATGCATCTGTAAAATAATTTCATGCAAATCCTTTTCTCTTGTTCCTCTTTTAATATTTTTTCAGGGGGTGCAATTTGATTTGTGTTGCTGTATTTTCTCCCACGTCCACTATCGCATATCAGTGCATCATGAGTCCTTTGCACGTGTGTTGATTAAAATGCATATTTTTGGTGCTTTGCTTGTCTTTTAGGTAATTAGTTATATTTCCTTTAGAGTGTTGG 1663 0.4239 MNLKMDSDRAKLFVGGISRDTTEDVLKVHFAKYGVVSDSTVSLDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEYHQHQNQFQIRGGGSYNASNDCSSDNNVRTKKIFVGGLPAGISEGEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKNFHDLNGRQVEVKRAVPKEGNPGYDGFSKLRNKSERGVPKNFPPYSHRNMLLGFAPMPWYSGDGIYAYGSNGYGCWYPMSGYGGSGYVVPSDASRNFWYGPMITGPQPCQVPYASAVPNVAYVGGRIGIVGSGAGSLGYNGILGSATNLKFDQPFNANGFVRGNVTSPHGVKQDVVDSSSLKGSNGEISS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01210 370 SUPERFAMILY RNA-binding domain, RBD 114 206 IPR035979 GO:0003676
Pste2g01210 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Pste2g01210 370 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 300 - -
Pste2g01210 370 SUPERFAMILY RNA-binding domain, RBD 6 107 IPR035979 GO:0003676
Pste2g01210 370 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Pste2g01210 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Pste2g01210 370 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Pste2g01210 370 CDD RRM2_Hrp1p 121 198 - -
Pste2g01210 370 FunFam RNA-binding protein 1 116 206 - -
Pste2g01210 370 Gene3D - 116 203 IPR012677 -
Pste2g01210 370 SMART rrm1_1 121 193 IPR000504 GO:0003723
Pste2g01210 370 SMART rrm1_1 11 82 IPR000504 GO:0003723
Pste2g01210 370 Gene3D - 2 110 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01210 Pste-Chr2 13179302 13181087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01210 6 258 Eukaryotic Initiation Factors Gene Family AT3G16380 26.953 2.24e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01210 2 13179302 13181087 Pste2g01210 2 13179302 13181087 ECH