Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01196 ATCCAAAACGGTTGAAAATGTTGAACCCCGAACCGCCGCCGCAGATGGTCAACCCGCCGGCGACGCCGTTGAACCGTGAAACGACGTCGCTGAGGAAGAGGCAGAGAGTGAGAATTCCCGTTCCGCCCTTGGCGGAAGTGGTAGAGGCGGAGTCCTCCTGGTCACCGATGGCGAAGTCCTCGAAAGCGACGAAGCAAAACGACGGCGTTTCCACTCCCGTGGAGGTGATCGACCTCTCGGACAACGAAGACGACGACGACGACGACGACGTTCGCATCCTGAAGTTCACTCCGACGAGAACGTGCTTCGGAAAACGCAGAAAGGCAAAGGGAGAGTGTTCGAACGCGGCGGCCTTCGTCTGCGAAATCTGCGCGGAAACGAAAAGAGGACTGGACGCGTTCTCCATCGCGGGATGCTGCCACGTGTACTGCAAGGAGTGCGTGGGTTTGTACATTGAATCGAAGGTGGAGGAGAACGTGGTGAACATCGGGTGTCCTGTGCCGCGGTGCAGGGGATTATTGGAAGCGGAGGATTGCCGCGAGATTCTGGCGCCTGGGGTTTTGGAGCGGTGGGGGAAGGCCTTGTGTGAGGCCGTGATTTGTGCGGAGGAGAAGTTTTATTGCCCCTTTGCGGATTGTTCGGCGCTGCTGATTCGGGGGAGTGAGGATGAGATTAGGGAATCTGAGTGTCCTAATTGTAGGAGGCTGTTCTGTGCGATGTGTAGGGTACCCTGGCACACTGGGATACCCTGCGAGGAGTTTCAGAAACTCAACGCCGATGAGACGCAGAACGAGGATATCATGCTCATGAACCTCGCTAACCAAATGATGTGGAAAAGATGCCCCACTTGTATGTTTTACGTCGCCAAATCCCATGGCTGCATGTACATCAAATGCAGATGTGGAACAGCCTTCTGTTACAACTGTGGAAGCCTTAATTTAACCTCCTCCCATTGTTGTCCCTACTGTAGACGATAAGGAAATTATGGCAGCAAGAAAGTTTAAACATATTATCTATTGGAACCTATCTGAAACTCTTCCTAATACCTCTCCTACAGGAGGGCTTTATTATATGCTTTAACATTATTCTGTACAGCTAATAACTAAGCTTTTTCAAATATTCGATCATACTCTCTGTGTCTGCTTTTAGTATGAGTTTATGAAAGCATAATGCCTCG 1177 0.5123 MLNPEPPPQMVNPPATPLNRETTSLRKRQRVRIPVPPLAEVVEAESSWSPMAKSSKATKQNDGVSTPVEVIDLSDNEDDDDDDDVRILKFTPTRTCFGKRRKAKGECSNAAAFVCEICAETKRGLDAFSIAGCCHVYCKECVGLYIESKVEENVVNIGCPVPRCRGLLEAEDCREILAPGVLERWGKALCEAVICAEEKFYCPFADCSALLIRGSEDEIRESECPNCRRLFCAMCRVPWHTGIPCEEFQKLNADETQNEDIMLMNLANQMMWKRCPTCMFYVAKSHGCMYIKCRCGTAFCYNCGSLNLTSSHCCPYCRR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01196 319 MobiDBLite consensus disorder prediction 1 81 - -
Pste2g01196 319 ProSiteProfiles TRIAD supradomain profile. 111 319 IPR044066 -
Pste2g01196 319 SUPERFAMILY RING/U-box 112 192 - -
Pste2g01196 319 SUPERFAMILY RING/U-box 188 250 - -
Pste2g01196 319 FunFam RBR-type E3 ubiquitin transferase 110 196 - -
Pste2g01196 319 ProSitePatterns Zinc finger RING-type signature. 133 142 IPR017907 -
Pste2g01196 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 196 IPR013083 -
Pste2g01196 319 ProSiteProfiles Zinc finger RING-type profile. 115 163 IPR001841 -
Pste2g01196 319 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 30 313 IPR031127 GO:0004842|GO:0016567
Pste2g01196 319 CDD Rcat_RBR_unk 271 304 - -
Pste2g01196 319 Gene3D - 242 319 - -
Pste2g01196 319 Pfam IBR domain, a half RING-finger domain 187 245 IPR002867 GO:0008270
Pste2g01196 319 SMART ibrneu5 183 245 IPR002867 GO:0008270
Pste2g01196 319 SMART ibrneu5 256 313 IPR002867 GO:0008270
Pste2g01196 319 CDD BRcat_RBR_unk 198 248 - -
Pste2g01196 319 MobiDBLite consensus disorder prediction 48 67 - -
Pste2g01196 319 SUPERFAMILY RING/U-box 259 316 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01196 115 305 C3H Transcription Factor Family AT2G19610 30.846 2.97e-20 89.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01196 2 12964823 12966643 Pste2g01196 2 12964823 12966643 ECH