LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste2g01161	ATGAATATGACAAATAAACCAAACCAAAATAGTCCCACCAATGAGCTTCAGTCTCAGTCTCAGTCTCAGCAAGTGCAACAACAACACAGTGACAAGACAAAGGGGTGTGAGAGATCTTCTAAGCTCACACACATCAAAATTTACCCTGCACCGACTACTCGCTACCAGGACATTGTTCGTGATGCAAACCTCTTCTGGGAAACACTTCAAGCTTTTCACAATTCACTTGGCACCAAATACAAGGTTGCTACTTTGGGAGGAAAGTCACTTGATCTACATCGCCTTTTTGTGGAAATTACAACTCGTGGGGGGATTGAAAAGGTGATTGTTGATAGAAAGTGGAAGGAAGTAATTCTATCTTTCAATTTCAAAGATACCATAACAAGTGCATCACTTGTGGTCCGCAAATCCTATTTGTCCATGCTTTATCACTTTGAGCAAGTAGGCCAATCAGGTTATCCCTATAGCTCCACAACCATTCCAGAAGTTGCTGCTGTGAATGATTCACCTGTTCAGGGTAGTCCAGTACATGCATGTGATGGTATGATTTATGGAACAATAGATGCAAAATTTGATGGTGGATATGTAGTTACAATGACACTGGGTTCTGAGCAGCTGAAAGGTGTCCTGTTTCATGTTTCTGACACTGTATCCCATAATACTCATACTGAAGGCATGTCTAGTTCACAGAATATTGGTGAAGGCATGACTAGTTCACAGAGTCGGAAGAGAGCAAAACATGCAGCACGCGATCCATTTCGACCCAAGTCAAACAGGAGTGGTTACAACTTTTTCTTTGCTGAGAATTATGCTAGGCTGAAGCCCTCTTATCATGGGCAAGAGAGATCAATTAGTAAGAGGATTGGTTTTCTGTGGAACAATCTGTCAGAAGCAGAAAGACAGGTTTATCAAGAAAAAGGGGTGAGGGATAAGGAAAGATATAGAACTGAACTGATGGAGTACAAATCCAATAATTCTACTCCAAATGCTCAACAGGCTGTTTTATGTAATCCTTAGACTACATTCTTCACCTTTTGTTATTTGATTTGTCTGTTATAGTGAACTTTCATACCATTCTACAGTGTAGCTATGTGACTATTCTGGTGTAAACTATGCTGAATGATTTTAATAAACATCTTGTAGCAGTTAATTTATTGTAGTGATATGGTAATCTAATCTTGGC	1183	0.3973	MNMTNKPNQNSPTNELQSQSQSQQVQQQHSDKTKGCERSSKLTHIKIYPAPTTRYQDIVRDANLFWETLQAFHNSLGTKYKVATLGGKSLDLHRLFVEITTRGGIEKVIVDRKWKEVILSFNFKDTITSASLVVRKSYLSMLYHFEQVGQSGYPYSSTTIPEVAAVNDSPVQGSPVHACDGMIYGTIDAKFDGGYVVTMTLGSEQLKGVLFHVSDTVSHNTHTEGMSSSQNIGEGMTSSQSRKRAKHAARDPFRPKSNRSGYNFFFAENYARLKPSYHGQERSISKRIGFLWNNLSEAERQVYQEKGVRDKERYRTELMEYKSNNSTPNAQQAVLCNP	338

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste2g01161	338	PANTHER	HIGH MOBILITY GROUP B PROTEIN 9	23	331	-	-
	Pste2g01161	338	Gene3D	-	51	158	IPR036431	GO:0003677
	Pste2g01161	338	MobiDBLite	consensus disorder prediction	220	255	-	-
	Pste2g01161	338	SUPERFAMILY	HMG-box	254	326	IPR036910	-
	Pste2g01161	338	Pfam	ARID/BRIGHT DNA binding domain	63	146	IPR001606	GO:0003677
	Pste2g01161	338	SMART	ARID_2	56	146	-	-
	Pste2g01161	338	CDD	HMG-box_AtHMGB9-like	255	321	-	-
	Pste2g01161	338	ProSiteProfiles	HMG boxes A and B DNA-binding domains profile.	255	322	IPR009071	-
	Pste2g01161	338	ProSiteProfiles	ARID domain profile.	59	150	IPR001606	GO:0003677
	Pste2g01161	338	SMART	hmgende2	254	323	IPR009071	-
	Pste2g01161	338	MobiDBLite	consensus disorder prediction	240	254	-	-
	Pste2g01161	338	MobiDBLite	consensus disorder prediction	220	239	-	-
	Pste2g01161	338	MobiDBLite	consensus disorder prediction	1	38	-	-
	Pste2g01161	338	CDD	ARID_HMGB9-like	61	146	IPR045303	GO:0003677
	Pste2g01161	338	Pfam	HMG (high mobility group) box	255	322	IPR009071	-
	Pste2g01161	338	Gene3D	High mobility group box domain	238	334	IPR036910	-
	Pste2g01161	338	SMART	bright_3	60	151	IPR001606	GO:0003677
	Pste2g01161	338	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pste2g01161	338	SUPERFAMILY	ARID-like	58	148	IPR036431	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste2g01161	Pste-Chr2	12657974	12662590	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste2g01161	27	327	ARID Transcription Factor Family	AT3G13350	48.366	9.10e-95	283

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	ARID	Pste2g01161		ARID	1.1e-14	CL0123