Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01114 ATGGGGAGAGCAAAGCTTCCGATCAAAAAGATTGAGAACATAACCAATAGACAAGTCACTTTCTCCAAGAGGAGGAATGGACTCATCAAGAAGGCTTACGAACTTTCTGTTCTTTGTGATGTTGATGTGGCTCTCATCATGTTTTCCCCATCTGGAAAACCCAGTTTCTTCTCTGGCAACAAAAGGATGCATAACCAAGAGCGCATTCAAAAGTTGCTTAGTAAATTGAAAGATGAAGCTGATCAAATATGTAAATTCCCTAGTCCAAAGACTTCAGATTCCCAAATTGAGGAGGTTCAGAGAGAAATTTTTAGTTGCAAGTCTCAGTTGGAAGAGATGGAGAAGCGACTAAGGATATTTGAGGGGGATCCTTCTAAGATCACAACGCTCAGCGAGGCTGAATATCGTGAATATGTCCTTCAGGAAACTCTAAAACAAGTGCAACTGCGAAAGGTACATGCTGCAAAAACTTTAGATGTAAATGGATTTGTTACCAGAGCCTCAAAGAACCCAGTAGAATATTGGTTTCCACAGGGAGATCCACATGCTCAGACTCTGAACTTTGTTAATAATGTGTATGACCCTGCTCCTGTCAGAGATCACGAATCACATAGCACGGTAGTTGATATGTCAACAGTAACTTCGACCCTTCTGCATTCTGCAAACCGGCATCATGATGGTCAAATGAGTCCGAAGAATAGTTTAGGAGTTGACATCAATAATACCTTACGTGCTCAATTTGGACAAGATATTCACACCAATTCGTCCTCTTGGGAGTACCTTTATCCTTTA 792 0.4104 MGRAKLPIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGKPSFFSGNKRMHNQERIQKLLSKLKDEADQICKFPSPKTSDSQIEEVQREIFSCKSQLEEMEKRLRIFEGDPSKITTLSEAEYREYVLQETLKQVQLRKVHAAKTLDVNGFVTRASKNPVEYWFPQGDPHAQTLNFVNNVYDPAPVRDHESHSTVVDMSTVTSTLLHSANRHHDGQMSPKNSLGVDINNTLRAQFGQDIHTNSSSWEYLYPL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01114 264 Gene3D - 14 116 IPR036879 GO:0003677|GO:0046983
Pste2g01114 264 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Pste2g01114 264 FunFam Agamous-like MADS-box protein AGL66 isoform A 14 79 - -
Pste2g01114 264 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Pste2g01114 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste2g01114 264 Coils Coil 96 116 - -
Pste2g01114 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste2g01114 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste2g01114 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste2g01114 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Pste2g01114 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Pste2g01114 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01114 Pste-Chr2 12085269 12089673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01114 1 178 Type I MADS-box Gene Family AT1G22130 40.455 1.31e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste2g01114 SRF-TF 9e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01114 2 12085269 12089673 Pste2g01114 2 12085269 12089673 ECH