Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01089 ATGATTGGGGTGGCTACTGAAACTGAGAAATTTGAATCACAATTTCCAGTTCTTGAAAATAACCCTTGGCGGCACAAGCCTAAAGATAACAATGTGGTAGAGTCTTCTGACAGTCTGAGAAATAGAAAGATATCAGCTCGATGGGATCCAACTGAAGCATGTCGGCCTATAATTGAAGAAGCACCTGTTTTTCATCCAACTGTTGAAGAGTTTGAAGACACACTCAGTTACATAGCAAAGATAAGACCCATAGCTGAACCCTATGGCATATGTAGGATTGTTCCTCCAGCTAGCTGGGTTCCACCCTGTCCTCTTAAGGAGAAAGATTTATGGGAAAATACTGCATTTCCCACCCGTATTCAACAAATTGATTTGCTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAGGAAGCGAAAACGTAGAAGGAACTCCAAGACAGGCACATGTAGGAGGAAGCCTGCCAATGCAGTTTCTAAAGCTAAGAATGCTTCTGAGTCTGAAGAGAAATTTGGATTTCAATCAGGGTCAGACTTCACGCTTAAAGACTTTCAGCAATATGCTAATTATTTTAAGGACTGCTACTTTGGGTTGAGAGATGCCAATGGAGACCAAATAGTTACAGACAGTAACCATCAGAAGAGATGGGAGCCCTCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATTGAGAAACCAACTGATGAGGTTGAGGTTTATTACGGAGCTGACTTGGAAACTGGTGCACTTGGAAGTGGTTTTCCTAAGGCATCATCCTTGACTAACAGTGACTCAGATCTATATGCCCTGTCTGGCTGGAATCTGAACAATTTTGCTCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCTTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTAAACTATATGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCAGGAATCCATGCACTAGCTTTGGAAAATGTAATGATGAAGCACTTGCCGGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGATGTCCCCATTGCATTTGTTCAGTTTTTAGCATTCTATGTTACCCAGTTTTCTCCTTCAATTCTTAAATCTGAAGGAGTTCCTGTATATCGCACAGCTCAGCATTCTGGAGAATTTGTTATTACCTTTCCCAGGGCTTACCATGCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTATTGATTGGTTAATGCATGGACAAAATGCTGTTGAGCTTTACAGTTTACAATGTCGTAAAACATCATTGTCACATGACAAGCTGTTATTTGGATCAGCACTGGAAGCTGTACAGGCCCTTGCAGAGCTTGTTCTTGGAAAGGAAACTCCAAAAAATTTGAAATGGAGAAGTGTCTGTGGGAAAGATGGAAATCTTACCAAGGCAGTTAAGGCAAGGATAATGATGGAAGAAGCAAGGCTGGGATGCTTTCCAGCTCATCTTAAGTTACTGAAGATGAACAGTGAGTTTGATTTGGACAAGGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGCACCTATCTGCTGTGGGTTGTGAGTGTTCTCCTGATAGATATTCTTGTCTTAAGCATGCTAATTTGTTCTGCTCGTGTGGAATGGAGAAAAGGTTTGTTCTGCTTCGATATACTGTAAATGACCTAAATAAATTGCTTGAAGCATTAGAAGGGGAGTTACCCTCTATTGAGTTGTGGGCAAATAAAAACTTTGGAAAGGTTTCTGTCAATGCCAATGAGGTTTGTGTAGATAAACCAGATTTTAAGCAAGATATGTATGAAACCAAGAATCATGAAAAAAGGGAGACTAGGGAGAGCTCAGCTGGCTCTTTAGGAACCAAGGTTAGGTCAAATTTAAACACACCTAGCAGCCCTACTAGTCATATTACTTCAGAGATAGTGCAGTCTGAATCTCACCGTGTAACTTTTACTGCCACATATGACAGTATAGATAGTCATACTGATAATAATAATGATAAAACATTGGTCAAAGCCAACAAAGATAAAGTGGATCAGACAGGTTCTCTGGATTTGAATCTTGATGTCATTTCTGGTGAAAACGAAAATCATTTGCTGCATATTGCTGATAGCCATCATGATAAAGGTTTTTCAGTAGAGGAAAAAGTATGCTGTTCAGAGGCCAGAAAGAAAGATGACTTAAAATTCTGTGTTGAGGGTAACTTTCTAAAGAAAGATTTTTCATCCCCATGTTCAAGTGATGTTCACAATTATACATTTGATGGTGGAAAAATTGAGCTGGATCTGCGCACAGATTCAGATTCAGGAGAGTTGCACAACAATCTATTTAAAAGTGAAGTCATAAACACCACAGATACTAGAATGTCTTTGACCAATGAAAGCTGCTTGGTGCAAATGTTTGGTACTTCTGTTGAGCCTGTAAGTTTCGGATCTGTTGTTCACGGAAAGCTGTGGTGCAGTAAGCATGCAATATATGCGAAAGGATTCAAGAGTCGAGTCAACTTCTTTAGCATTCTTGATCCTACAAGAATTTGTAGCTATATTTCTGAAGTCATTGATGCTGGATTTCTTGGACCTCTTTTCAAGGTTAGCATGGAAGAATGTCCAAGTGAGGCTTTCACATATACTTCAGCCAATAATTGTTGGGAATCAGTTCTGAGGAGATTACATCATGAAATCAACAGGCGGATAAGTCTAGGTGAACTAGAATTTCCTCCGTTAGAGCTCCTTAAAAGCATTAACGGTCATAGAATGTTTGGCTTCTTTTTACCATCCTTTATTCAGGCTGTCGAAGAACAAGATCCCAGTCATCTGTGCGTAGAGTACTGGAATCACAAAATTGCTTCTTCAAGCAGTGTTGTTGATAACTTTGCACATGGTTACGGCAGCTCTTCGGGTAATATCAATACCAAAATTTTTGGTATGGATTTGATTAAGCTGGAAAAGGAAAACATCCTTGAAGAGATGAAACTAATACTACAAAGGGCAAGTCCTGTTGAGTTAAACACAATGTGTAAGTTACTCAAAACTGATGCACAGTGCTGTGAATGGAGAGTTGTATTGCAAGTGCTGCTGGATGAGATTCAGAAAGTTTGTCAATAAATTATGAAGATCCTATTTCTTTCTGATTCTGGATAGTTATATTCCATTTAGTCATTATAGTTAGGTCCATTCTTTCAAAGGTAAATTAAACTGAAGAGTTTGCTGGGTGAAGCGGAGGTAAATTTTTGCTACTTGCCCATAATCAGTGACCTATATATAGTTGGATAAAGCCATTGACCCCTTTTCAATCTTTCCTCCATACATTTGCCTTTTAAGGTATAACTTTTAGTTGTAGTTGGATTTTTAGGGTTTTACATTTATTTCTCGTTTCTCTCAAAATTTCTGTATATAATTAAAAAAACGTTGCTGTTACAATAAATGATGAAACATGAAAGGTAGGGAAAATACATGGGGACATCTGATATTCAAATGCAACTGCATCTGTTCAGAATTTTCGGTGTATGTTCTTAGCCAAGCAAAATGGCA 3621 0.3919 MIGVATETEKFESQFPVLENNPWRHKPKDNNVVESSDSLRNRKISARWDPTEACRPIIEEAPVFHPTVEEFEDTLSYIAKIRPIAEPYGICRIVPPASWVPPCPLKEKDLWENTAFPTRIQQIDLLQNREPMRKKSRGRKRKRRRNSKTGTCRRKPANAVSKAKNASESEEKFGFQSGSDFTLKDFQQYANYFKDCYFGLRDANGDQIVTDSNHQKRWEPSEEEIEGEYWRIIEKPTDEVEVYYGADLETGALGSGFPKASSLTNSDSDLYALSGWNLNNFARLPGSVLSYEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGIHALALENVMMKHLPDLFEEQPNLLNELDVPIAFVQFLAFYVTQFSPSILKSEGVPVYRTAQHSGEFVITFPRAYHAGFNCGFNCAEAVNVAPIDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSALEAVQALAELVLGKETPKNLKWRSVCGKDGNLTKAVKARIMMEEARLGCFPAHLKLLKMNSEFDLDKERECFSCFYDLHLSAVGCECSPDRYSCLKHANLFCSCGMEKRFVLLRYTVNDLNKLLEALEGELPSIELWANKNFGKVSVNANEVCVDKPDFKQDMYETKNHEKRETRESSAGSLGTKVRSNLNTPSSPTSHITSEIVQSESHRVTFTATYDSIDSHTDNNNDKTLVKANKDKVDQTGSLDLNLDVISGENENHLLHIADSHHDKGFSVEEKVCCSEARKKDDLKFCVEGNFLKKDFSSPCSSDVHNYTFDGGKIELDLRTDSDSGELHNNLFKSEVINTTDTRMSLTNESCLVQMFGTSVEPVSFGSVVHGKLWCSKHAIYAKGFKSRVNFFSILDPTRICSYISEVIDAGFLGPLFKVSMEECPSEAFTYTSANNCWESVLRRLHHEINRRISLGELEFPPLELLKSINGHRMFGFFLPSFIQAVEEQDPSHLCVEYWNHKIASSSSVVDNFAHGYGSSSGNINTKIFGMDLIKLEKENILEEMKLILQRASPVELNTMCKLLKTDAQCCEWRVVLQVLLDEIQKVCQ 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01089 1064 ProSiteProfiles FYR domain FYRN motif profile. 827 885 IPR003888 GO:0005634
Pste2g01089 1064 SMART fyrn_3 841 885 IPR003888 GO:0005634
Pste2g01089 1064 Pfam F/Y rich C-terminus 889 976 IPR003889 GO:0005634
Pste2g01089 1064 MobiDBLite consensus disorder prediction 127 171 - -
Pste2g01089 1064 SUPERFAMILY Clavaminate synthase-like 170 471 - -
Pste2g01089 1064 SMART fyrc_3 891 983 IPR003889 GO:0005634
Pste2g01089 1064 MobiDBLite consensus disorder prediction 133 151 - -
Pste2g01089 1064 ProSiteProfiles JmjC domain profile. 273 449 IPR003347 -
Pste2g01089 1064 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
Pste2g01089 1064 Gene3D Cupin 46 433 - -
Pste2g01089 1064 SMART cupin_9 273 449 IPR003347 -
Pste2g01089 1064 Pfam jmjN domain 62 95 IPR003349 -
Pste2g01089 1064 Pfam F/Y-rich N-terminus 838 882 IPR003888 GO:0005634
Pste2g01089 1064 PANTHER LYSINE-SPECIFIC DEMETHYLASE 56 751 - -
Pste2g01089 1064 MobiDBLite consensus disorder prediction 633 668 - -
Pste2g01089 1064 Gene3D - 831 971 - -
Pste2g01089 1064 Pfam C5HC2 zinc finger 538 590 IPR004198 -
Pste2g01089 1064 SMART JmjN_1 60 101 IPR003349 -
Pste2g01089 1064 FunFam Putative lysine-specific demethylase JMJ16 833 971 - -
Pste2g01089 1064 ProSiteProfiles FYR domain FYRC motif profile. 887 977 IPR003889 GO:0005634
Pste2g01089 1064 Pfam JmjC domain, hydroxylase 303 432 IPR003347 -
Pste2g01089 1064 MobiDBLite consensus disorder prediction 646 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01089 Pste-Chr2 11656925 11666671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01089 69 1060 JUMONJI Transcription Factor Family AT4G20400 46.231 0.0 801
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste2g01089 JmjC 4.4e-40 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste2g01089 2 11656925 11666671 Pste2g01089 2 11656925 11666671 ECH