Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01055 GGTTAGTCATGTTGCACTGACTAAATTCAATGGAGAAGCCTTAAGAAAGACAGAAATGGCGCAAGTTCCCGAGAATCCCACCACTGACGAGGCGGTTTCCGGTGCGAACCCGTCGCTGATCCCCACCTCGTTGTACGTCGGGGATCTTGATCACGACGTCAACGATCCTCAGCTCTATGATCTCTTCAACCAGGTTGGCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACTCATCAATCCCTTGGTTACGGCTATGTCAATTTCAGTAACCCTCACGACGCCGCAAAAGCCTTGGATGTTCTTAATTTCACTCCGTTGAATGGCAAACCCATTAGAATAATGTACTCTCTTCGGGACCCGAGTGCTCGTAAGAGTGGTGCAGCTAATGTTTTTATAAAGAATTTGGATAAGGCAATTGATCATAAGGCTCTGCATGATACTTTTTCAACTTTTGGGAATATTCTATCATGCAAGATTGCCACAGATGCTTCTGGCCAGTCTAAAGGCCATGGATTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAATTTAAATGGCATGCTGATCAATGACAAACAGGTCTTTGTGGGTCCTTTCCTGCGCAAGCAGGATAGAGAGACTGCTCTTAGCGGCACAAAATTTAATAATGTTTATGTTAAGAACCTGTTGGAGTCAACAACGGATGCTGACTTGAAGAAAATTTTTGGAGAATATGGAGCTATCACTAGTGCTGTAGTAATGAGAGATGTAAATGGTAAATCGAAGTGCTTTGGTTTTGTCAATTTTGCAAATGCAGACGATGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAAAAATTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAATCTGAAAGGGAGCTTGAACTGAAAGGAAGGAATGAACAGAGTTCGAAGGAGGCCATTGATAAATATCAAGGTACAAACTTGTATATCAAGAACCTGGGTGATAGTGTTGGAGATGAAGAACTCAGGGAACTGTTCTCTGAGTTTGGTGCGATAACCTCATGCAAAGTTATGCGAGATCCAAATGGAATTAGTAGAGGATCTGGATTTGTTGCATTTTCAACTTCTGAAGGAGCAACTCGGGCTCTTACTCAAATGAATGGTAAAATGGTTGCTGGCAAACCCCTCTATGTTGCCCTTGCACAGAGAAAGGAAGAGAGGAGAGCAAGGTTACAGGCACAATTTTCACAAGCGAGGCCTGTTGCACCTCGAATGCCACTATATCCTGTAGGAGCTCCGGGGATAGGACAGCAATTTTTGTATGGGCAAGCACCTGCAACTATCATACCTCAAGCTGCATTTGGTTACCAGCAGCATGTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTTTGTTCCACTGGTTCAGCAGGGTCAACAGGGACAGCGCCCTGGTGGACAACGAGGAGCAGGCTCTATGCAACAGCACCAGCAACCACTGCCTTTGATGCACCAACAGATGCTTCCAAGGGGACATGCCTATCGTTATCCTCCTGGCTCCAATCTGCAAAGTATTCAACTGGCTGGAGTAGGTGGAGGAATGGTCACTTATGGCATGGGTCAGCCAATGCCCATTCATGCCCTGGCCTCATCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGCGAAGCTTTATACCCGTTAGTAGATAAGCTCGAGCATGATTCAGCAGCAAAGGTTACTGGTATGCTTTTGGAGATGGACCAGCCTGAGGTATTACATCTGCTTGAGTCACCAGATGCTCTCCAGGCAAAAGTTGCTGAGGCCATGGATGTGTTAAAAAGAGTTGCACAGCAGGAATCAGACAGCTCAGCTGATCAACTGGCTTCACTCTCCCTGAATGAAAATCTTGAGTCTTGATTCTGTATGTCAGTTTACATGAATACACATGTTCTTTAAACAGTCATAGTTTTGGCTTTTTGTAGGATTAGCAAACACTCCTTGGAGTAGCTTTTTGATGTGCATTTGCTTTGGTTTCTCTTCAATAGTATTACTTAGTTTGATATGACCGTCCTATTTTGGCCCGGTTTTCTTTGAAAAAGAATAGATTTAACTGCC 2128 0.4474 MAQVPENPTTDEAVSGANPSLIPTSLYVGDLDHDVNDPQLYDLFNQVGQVVSVRICRDVATHQSLGYGYVNFSNPHDAAKALDVLNFTPLNGKPIRIMYSLRDPSARKSGAANVFIKNLDKAIDHKALHDTFSTFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDNLNGMLINDKQVFVGPFLRKQDRETALSGTKFNNVYVKNLLESTTDADLKKIFGEYGAITSAVVMRDVNGKSKCFGFVNFANADDAAKAVEALNGKKFDGKEWYVGKAQKKSERELELKGRNEQSSKEAIDKYQGTNLYIKNLGDSVGDEELRELFSEFGAITSCKVMRDPNGISRGSGFVAFSTSEGATRALTQMNGKMVAGKPLYVALAQRKEERRARLQAQFSQARPVAPRMPLYPVGAPGIGQQFLYGQAPATIIPQAAFGYQQHVVPGMRPGGAPNFFVPLVQQGQQGQRPGGQRGAGSMQQHQQPLPLMHQQMLPRGHAYRYPPGSNLQSIQLAGVGGGMVTYGMGQPMPIHALASSLANATPEQQRTMLGEALYPLVDKLEHDSAAKVTGMLLEMDQPEVLHLLESPDALQAKVAEAMDVLKRVAQQESDSSADQLASLSLNENLES 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01055 624 Pfam Poly-adenylate binding protein, unique domain 534 598 IPR002004 GO:0003723
Pste2g01055 624 SMART poly_2 538 601 IPR002004 GO:0003723
Pste2g01055 624 FunFam Polyadenylate-binding protein 522 604 - -
Pste2g01055 624 SUPERFAMILY RNA-binding domain, RBD 24 192 IPR035979 GO:0003676
Pste2g01055 624 SUPERFAMILY PABC (PABP) domain 479 616 IPR036053 GO:0003723
Pste2g01055 624 SUPERFAMILY RNA-binding domain, RBD 203 387 IPR035979 GO:0003676
Pste2g01055 624 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 25 599 IPR006515 GO:0003723
Pste2g01055 624 Gene3D - 188 289 IPR012677 -
Pste2g01055 624 FunFam Polyadenylate-binding protein 193 288 - -
Pste2g01055 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 280 IPR000504 GO:0003723
Pste2g01055 624 SMART rrm2_1 307 379 IPR003954 GO:0003676
Pste2g01055 624 SMART rrm2_1 25 98 IPR003954 GO:0003676
Pste2g01055 624 SMART rrm2_1 113 185 IPR003954 GO:0003676
Pste2g01055 624 SMART rrm2_1 204 276 IPR003954 GO:0003676
Pste2g01055 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Pste2g01055 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 273 IPR000504 GO:0003723
Pste2g01055 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Pste2g01055 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 376 IPR000504 GO:0003723
Pste2g01055 624 FunFam Polyadenylate-binding protein 4 107 - -
Pste2g01055 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 184 IPR000504 GO:0003723
Pste2g01055 624 CDD RRM3_I_PABPs 202 281 - -
Pste2g01055 624 FunFam Polyadenylate-binding protein 289 394 - -
Pste2g01055 624 MobiDBLite consensus disorder prediction 603 624 - -
Pste2g01055 624 SMART rrm1_1 113 185 IPR000504 GO:0003723
Pste2g01055 624 SMART rrm1_1 204 276 IPR000504 GO:0003723
Pste2g01055 624 SMART rrm1_1 307 379 IPR000504 GO:0003723
Pste2g01055 624 SMART rrm1_1 25 98 IPR000504 GO:0003723
Pste2g01055 624 CDD RRM4_I_PABPs 305 383 - -
Pste2g01055 624 MobiDBLite consensus disorder prediction 460 479 - -
Pste2g01055 624 FunFam Polyadenylate-binding protein 113 186 - -
Pste2g01055 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 383 IPR000504 GO:0003723
Pste2g01055 624 Gene3D - 112 185 IPR012677 -
Pste2g01055 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Pste2g01055 624 PANTHER RNA BINDING PROTEIN 24 86 - -
Pste2g01055 624 CDD RRM2_I_PABPs 110 186 IPR045305 -
Pste2g01055 624 CDD RRM1_I_PABPs 25 104 IPR034364 -
Pste2g01055 624 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 526 603 IPR002004 GO:0003723
Pste2g01055 624 Gene3D - 522 605 - -
Pste2g01055 624 Gene3D - 290 392 IPR012677 -
Pste2g01055 624 Gene3D - 9 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01055 Pste-Chr2 11290207 11295695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01055 24 619 Eukaryotic Initiation Factors Gene Family AT4G34110 66.722 0.0 786