Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste2g01033 ATGAGCTCTGGAAGTAGAGGGAATGTGAAAGACACAAGCTTGAGCACATCAGCTGAAAGCAACATGAACAGCAAGAGGGACAAGATACTGGCTCAGTACAGTGCAGATGCTGAGATTATGGCTGAGTTTGAGCAGTCTGGTGTGTCTGGGAAATTATTTGACTACTCAAAGATGGTTCTTGATCCTCCCAGGTTAGTGTCTGAAGAGAAAATGATTGCTTATTTGTCAAAAATCCAAAGGGGTGGCCTTATCCAACCCTTTGGATGTATGCTTGCAATTGAGGAACCTACTTTTAGGATTATTGGGTACAGTGAAAATTGTTTTCAATTGTTGGGTTTGGAGAGGCAAATTGAGTCTAAGCAGTTTATTAGTCTGATTGGGGTTGATGCCACAACTCTTTTCACTCCCACTTCTGGGGCTTCCATTGCAAAAGCTGTGGCTTCTAGGGAAATTTCACTTTTGAACCCAATTTGGGTGTATGCAAGGACAACCCAAAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGGGTTGTGATTGATTTGGAGCCTGCACGGTTGAGTGATCCGGCATTGTCACTAGCTGGGGCTGTTCAGTCACAGAAGCTGGCTGTTAGGGCTATTTCAAGGCTGCAATCTCTTCCTGGGGAAGATATTGGTCTGTTGTGTGACACTGTTGTTGAGGAAGTGCAGAAGCTTACTGGATATGAAAGGGTTATGGTTTATAAGTTTCATGAGGATGATCATGGTGAGGTTGTATCTGAGATTAGGAGGTCTGATTTAGAGCCTTACTTGGGTTTGCATTATCCTGCCACTGATATCCCCCAAGCTTCGCGGTTCTTGTTCAAGCAAAACCGGGTCAGGATGATCTGTGATTGCCATGCAAAGCCAGTTAAGGTCATTCAGAGTGAAGAATTGAAGCAACCTCTTTGCTTGGTGAATTCAACCCTTAGGTTACCACATGGTTGTCACACTCAGTACATGGCTAACATGGGCTCAATTGCCTCTCTGGTGATGGCTATAATAGTCAATGGAAAGGATGCGACAAGGCTATGGGGTTTGCTAGTTTGTCATCACACTTCACCACGCTATGTGTCTTTCCCTGTTCGCTATGCGTGTGAGTTCCTAATGCAGGCTTTTGGACTGCAGCTTTACATGGAGATTCAATTGGCATCACAAATGGAAGAGAAGAGAATTCTTAAAACACAAACCTTACTGTGTGACATGCTCCTTCGTGATGCACCCTTTGGCATTGTTACTCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCTTGTACTATGAAGGAAACTTTTGGTTGTTAGGAACAACCCCAACTGAAGCACAGGTGAAAGACATTGCTGAATGGCTACTTAGTAATCATGGAGACTCAACTGGTTTGACAACAGATAGTTTGGCTGATGCTGGTTATCCAGGCGCGGCTTCGCTGGGAGATGCAGTTTGTGGCATGGCCACTGCAAGAATCAATTCAAAACATTTCTTGTTCTGGTTCAGGTCTCACACTGCTAAGGAAATGAAATGGGGAGGAGCCAAGCACCATCCAGAGGATAAGGATGATGGGGGAAAAATGAACCCAAGATCATCATTTAAAGCTTTTCTTGAAGTAGTCAAAAGCAAAAGTTTGCCTTGGGAAGTGACAGAAATCAATGCTATTCACTCATTACAGCTAATAATAAGAGATTCATTCCAAGACACAGAAAACACTGATCCAAAGACTTTAAATTATATGCAGAAAAGTGACACTGCATCTGAGGGGATGGATGAACTCAGTTCAGTGGCACTTGAAATGGTGAGATTAATTGAGACAGCAACAGTCCCAATTTTTGGTGTTGATTCAGGTGGCATAATCAATGGATGGAATTCAAAAATTGCTGAATTGACAAGTCTACAGGCCGGCCAAGAGGACAGAAATGTTGAGTTGAAAATAAAACACTTTGGGATTGATCGACAACAGGAAGTTGTATATCTCATGGTCAATGCTTGCACTAGTAGGGACTACACAGATGCTATTATTGGGGTATGCTTTGTAGGTCAAGACATCACTTATGAGAAAGTGGTTCAAGATAAATTCATCAAGTTGGAAGGTGATTACAAAGCTATCATCCAAAGTCTCAGTCCACTGATTCCACCCATATTTTCTTCTGATGAGAATGCCTGCTGCTCTGAATGGAATGCAGCAATGGAAAGGCTTACTGGTTGGAAAAGAGATGAAGTCATAGGAAAATTGCTTCCTGGTGAAATTTTTGGAAGTTTTTGTCGACTAAAAGGTCAAGATACATTGACTAATTTTATGATTTTACTGTATCGTGGAATAAGTGGTCAAGATTCTGAGAAGTTACCATTTGGATTTTTTGATAGAAATGGAGAGTTTCTGGAGACTTATATAACAGCAAACAAGAGAATTGATGCTGGAGGGAAAATGCTTGGCTGTTTCTGCTTCTTGCAGATAGTAATGCCAGACCTGAATCAGCCTTCTGAAGAGGACAAGCCTAGAGACCGGGAAAGCATTTCTGAATCTAATAAAGAGTTGGTTTATATACTACAAGAGATGAAGAAGCCTTTAAATGGTATACGATTCACCCACCAACTTTTGGAAAACACAACTGTATCAGAAAACCAAAAACAATTTCTTGACACTAGTGATGCTTGTGAAAGACAAATCATGGCAATTATTGAGGATACAAATTTAGGAAGTATTCACGAAAGCAATTTGCAGCTAAAAATGGAAGAATTTGTTCTGGGAAATATTTTAGATGCCGTTGTCAGTCAAGTCATGATGTTGATAAGAGAGAAGAACTTACAACTGTTTCATGAAATTCCTGATGAAATAAAAATGCTTTCTCTGTATGGTGACCAAATTAGGCTTCAAGTGGTCTTGTCTGACCTTTTGCTTAACGTAGTCAACCATACACCTTCTCCAAATGGCTGGGTAGAAATCAAGATTTCACCTGGTTTAAAGATAATACAAGATGGCAATGAGTTTATACATCTGAAGTTCAGAATGACGCATTCTGGTCCAGGTATTGCTTCTGATGTTCTTCATGATATGTTTGAAGGAGGGAATCAATGGACTACACAGGAAGGTCTAGGACTAAATATGTCCAGGAAAATCCTCAGTAGGATGAGTGGTCATGTCCACTATGTAAGAGAGCAAAATAAATGCTATTTTCTCATTGATCTTGAAATTAGAACAAGAAAAGAAAGGCAAAGGAATTTGCATCATGCAGAGACAAGCATGTTAAGCTAGTTTTATTCTCTTGATGCTCTTAAAAGTGAAAAGGGTCATTTGCAGAGAGAAGCTTGTAATCTTGCTTTGAAGCTTGGCAGATATGGCAAGTGCTCATTTCAACCCTAGTATTGATCTTATAATGCATCAAAGGAAGTTTATGTTTGTGCAAGCAAATTTTTAGTGAATATATATACCTTTTGTTCTATGCATTAAATATTACATTAACAAATATAGTAGAATACTAAGAGGAATTTTGAATATTGTATGATCCTTCCTCCAAAGACAAGCATGGCTAATTATTGTTTGTAATACTAATATTTTATATATAAATAAGATGCAATATTGTAACATTTCCC 3620 0.3983 MSSGSRGNVKDTSLSTSAESNMNSKRDKILAQYSADAEIMAEFEQSGVSGKLFDYSKMVLDPPRLVSEEKMIAYLSKIQRGGLIQPFGCMLAIEEPTFRIIGYSENCFQLLGLERQIESKQFISLIGVDATTLFTPTSGASIAKAVASREISLLNPIWVYARTTQKPFYAILHRIDVGVVIDLEPARLSDPALSLAGAVQSQKLAVRAISRLQSLPGEDIGLLCDTVVEEVQKLTGYERVMVYKFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQASRFLFKQNRVRMICDCHAKPVKVIQSEELKQPLCLVNSTLRLPHGCHTQYMANMGSIASLVMAIIVNGKDATRLWGLLVCHHTSPRYVSFPVRYACEFLMQAFGLQLYMEIQLASQMEEKRILKTQTLLCDMLLRDAPFGIVTQSPSIMDLVKCDGAALYYEGNFWLLGTTPTEAQVKDIAEWLLSNHGDSTGLTTDSLADAGYPGAASLGDAVCGMATARINSKHFLFWFRSHTAKEMKWGGAKHHPEDKDDGGKMNPRSSFKAFLEVVKSKSLPWEVTEINAIHSLQLIIRDSFQDTENTDPKTLNYMQKSDTASEGMDELSSVALEMVRLIETATVPIFGVDSGGIINGWNSKIAELTSLQAGQEDRNVELKIKHFGIDRQQEVVYLMVNACTSRDYTDAIIGVCFVGQDITYEKVVQDKFIKLEGDYKAIIQSLSPLIPPIFSSDENACCSEWNAAMERLTGWKRDEVIGKLLPGEIFGSFCRLKGQDTLTNFMILLYRGISGQDSEKLPFGFFDRNGEFLETYITANKRIDAGGKMLGCFCFLQIVMPDLNQPSEEDKPRDRESISESNKELVYILQEMKKPLNGIRFTHQLLENTTVSENQKQFLDTSDACERQIMAIIEDTNLGSIHESNLQLKMEEFVLGNILDAVVSQVMMLIREKNLQLFHEIPDEIKMLSLYGDQIRLQVVLSDLLLNVVNHTPSPNGWVEIKISPGLKIIQDGNEFIHLKFRMTHSGPGIASDVLHDMFEGGNQWTTQEGLGLNMSRKILSRMSGHVHYVREQNKCYFLIDLEIRTRKERQRNLHHAETSMLS 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste2g01033 1093 SMART HKATPase_4 962 1076 IPR003594 -
Pste2g01033 1093 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 962 1063 IPR003594 -
Pste2g01033 1093 PIRSF Phytochrome_conventional 6 645 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste2g01033 1093 PIRSF Phytochrome_conventional 641 1083 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste2g01033 1093 Gene3D - 893 1068 IPR036890 -
Pste2g01033 1093 CDD PAS 719 827 IPR000014 -
Pste2g01033 1093 ProSiteProfiles PAS repeat profile. 604 642 IPR000014 -
Pste2g01033 1093 CDD HisKA 861 905 IPR003661 GO:0000155|GO:0007165
Pste2g01033 1093 ProSiteProfiles PAS repeat profile. 708 753 IPR000014 -
Pste2g01033 1093 SUPERFAMILY GAF domain-like 397 575 - -
Pste2g01033 1093 ProSiteProfiles PAC domain profile. 648 704 IPR000700 -
Pste2g01033 1093 SUPERFAMILY GAF domain-like 198 385 - -
Pste2g01033 1093 SUPERFAMILY PYP-like sensor domain (PAS domain) 722 824 IPR035965 -
Pste2g01033 1093 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Pste2g01033 1093 MobiDBLite consensus disorder prediction 1 23 - -
Pste2g01033 1093 Gene3D PAS domain 77 322 - -
Pste2g01033 1093 CDD HATPase_Phy-like 961 1074 IPR044767 -
Pste2g01033 1093 FunFam Phytochrome 721 829 - -
Pste2g01033 1093 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Pste2g01033 1093 SMART gaf_1 219 399 IPR003018 GO:0005515
Pste2g01033 1093 Pfam Phytochrome region 402 577 IPR013515 GO:0006355|GO:0009584
Pste2g01033 1093 SMART pas_2 606 675 IPR000014 -
Pste2g01033 1093 SMART pas_2 707 777 IPR000014 -
Pste2g01033 1093 Gene3D - 394 567 IPR043150 -
Pste2g01033 1093 PANTHER OS08G0260000 PROTEIN 71 911 - -
Pste2g01033 1093 Pfam PAS fold 73 186 IPR013654 GO:0006355
Pste2g01033 1093 Gene3D - 200 550 IPR029016 -
Pste2g01033 1093 Pfam GAF domain 219 389 IPR003018 GO:0005515
Pste2g01033 1093 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 186 IPR035965 -
Pste2g01033 1093 Gene3D PAS domain 721 830 - -
Pste2g01033 1093 SMART HisKA_10 851 915 IPR003661 GO:0000155|GO:0007165
Pste2g01033 1093 FunFam Phytochrome 394 524 - -
Pste2g01033 1093 Pfam PAS fold 607 643 IPR013767 GO:0006355
Pste2g01033 1093 Pfam PAS fold 708 827 IPR013767 GO:0006355
Pste2g01033 1093 ProSiteProfiles Histidine kinase domain profile. 857 1076 IPR005467 -
Pste2g01033 1093 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 915 1074 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste2g01033 Pste-Chr2 10923060 10929070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste2g01033 15 1076 Histidine Kinase Gene Family AT4G18130 61.775 0.0 1423